Caenorhabditis_elegans: The marey map for the species Caenorhabditis_elegans

In MareyMap: Estimation of Meiotic Recombination Rates Using Marey Maps

Description

A marey map is an interpolation between genetical and physical maps of a mapomosome. This data file contains marey map for the species Caenorhabditis_elegans. This map is held into an object of class MapSet.

Usage

data(Caenorhabditis_elegans)

Format

Caenorhabditis_elegans contains an object of the class MapSet-class. The maps inside this object (objects of the class MareyMap-class) can be accessed using the operator "[[" (see example) This set contains 6 maps called "I", "II", "III", "IV", "V" and "X".

Author(s)

Aurélie Siberchicot [e-mail] and Clément Rezvoy

Source

Wormbase Release WS160, https://wormbase.org//

Examples

data(Caenorhabditis_elegans)
map <- Caenorhabditis_elegans[["I"]]
plot(map)
names(Caenorhabditis_elegans@maps)

Example output

Attaching package: 'MareyMap'

The following objects are masked from 'package:stats':

    df, setNames

Warning messages:
1: no DISPLAY variable so Tk is not available 
2: loading Rplot failed 
[1] "I"   "II"  "III" "IV"  "V"   "X"  

MareyMap documentation built on Dec. 4, 2020, 5:08 p.m.