SpeciesMaps-class: Class "MapSet"

In MareyMap: Estimation of Meiotic Recombination Rates Using Marey Maps

Description

This class is a collection of MareyMap for a given set. Not that useful on its own, it is used for internal organization inside a MapCollection

Objects from the Class

Objects can be created by calls of the form new("MapSet", ...). Or using the function MapSet().

Slots

maps:

Object of class "list" containing all the MareyMap of the set.

setName:

Object of class "character" containing the name of the set

Methods

[

signature(x = "MapSet"): returns a map from the list

[[<-

signature(x = "MapSet", i = "ANY", j = "ANY", value = "MareyMap"): replaces a map in the list with a new one

[[

signature(x = "MapSet"): returns a map from the list.

$

signature(x = "MapSet"): access a map by name in the list.

+

signature(e1 = "MapSet", e2 = "MareyMap"): adds a map to the collection.

-

signature(e1 = "MapSet", e2 = "character"): removes the map named e2 from the object e1.

coerce

signature(from = "MapSet", to = "data.frame"): converts the specieMaps object into a data.frame.

mapNames

signature(object = "MapSet"): returns a vector containing the names of all the maps.

setName<-

signature(object = "MapSet", value = "character"): changes the name of the set. Also changes the named of all MareyMap objects inside the list.

setName

signature(object = "MapSet"): returns the name of the set.

length

signature(object = "MapCollection"): returns the length of the set

textFile

signature(object = "MapSet", file = "character"): Writes the content of the MapSet object to file.

Author(s)

Aurélie Siberchicot [e-mail] and Clément Rezvoy

See Also

MapCollection-class MareyMap-class

Examples

data(Homo_sapiens_mean)
set <- Homo_sapiens_mean
setName(set) <- "Human"
set[["Chromosome 01"]]

MareyMap documentation built on Dec. 4, 2020, 5:08 p.m.