Drosophila_melanogaster: The marey map for the species Drosophila melanogaster

In MareyMap: Estimation of Meiotic Recombination Rates Using Marey Maps

Description

A marey map is an interpolation between genetical and physical maps of a mapomosome. This data file contains marey map for the species Drosophila melanogaster. This map is held into an object of class MapSet.

Usage

data(Drosophila_melanogaster)

Format

Drosophila_melanogaster contains an object of the class MapSet-class. The maps inside this object (objects of the class MareyMap-class) can be accessed using the operator "[[" (see example) This set contains 6 maps called "2L", "2R", "3L", "3R", "4", "X".

Author(s)

Aurélie Siberchicot [e-mail] and Clément Rezvoy

Source

2nd release of D. mel genome, v 01/1998 Flybase. Marais G, Piganeau G.Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila melanogaster and Caenorhabditis elegans genomes. Mol Biol Evol. 2002 Sep;19(9):1399-406.

Examples

data(Drosophila_melanogaster)
map <- Drosophila_melanogaster[["2L"]]
plot(map)
names(Drosophila_melanogaster@maps)

Example output

Attaching package: 'MareyMap'

The following objects are masked from 'package:stats':

    df, setNames

Warning messages:
1: no DISPLAY variable so Tk is not available 
2: loading Rplot failed 
[1] "2L" "2R" "3L" "3R" "4"  "X" 

MareyMap documentation built on Dec. 4, 2020, 5:08 p.m.