snpsloc: Artificial data for Matrix eQTL sample code: SNP location...

Description Format Author(s) References See Also

Description

Artificial SNP location file for 15 markers.

snpid chr pos
Snp_01 chr1 721289
Snp_02 chr1 752565
... ... ...

Format

A data frame with 3 columns.

snpid

A column with SNP names. The order does not have to match the genotype data set.

chr

Chromosome number, i.e. chr1.

pos

Coordinate of the SNP.

Author(s)

Andrey A Shabalin andrey.shabalin@gmail.com

References

The package website: http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/

See Also

See Matrix_eQTL_engine for reference and sample code.


MatrixEQTL documentation built on Dec. 22, 2019, 5:06 p.m.