ASCA.Calculate | ASCA method (ANOVA-simultaneous component analysis) |
ASCAdata | Example data for ASCA.Calculate |
ASCA.DoPermutationTest | Permutation test for ASCA |
ASCAF | Indicator matrix for ASCA example. |
ASCA.GetPowerSet | Determines the power set of the input set. |
ASCA.GetRowRepeats | Determination of all unique row value combinations |
ASCA.GetSummary | Summary method for ASCA analyses |
ASCA.Plot | Plot ASCA results |
ASCA.PlotLoadings | Loadings plot for a specific factor/interaction of the ASCA |
ASCA.PlotScores | Score plot for a specific factor or interaction of the ASCA |
ASCA.PlotScoresPerLevel | ASCA scores plot with projected data. |
ASCAX | Data matrix for ASCA example |
FoM.Calculate | Calculate best fitting Figure of Merit using method by Van... |
FoMData | Example data for FoM.Calculate |
FoM.FitBinnedSampleRepeatErrors | Fitting step in Figure of Merit calculation. |
FoM.GetIdOrderedMatrix | Order the matrix of samples by their ID |
FoM.OrderAndBinIdByMeans | Bin sample repeats and samples with similar means |
MetStaT.ConcatWithStringPars | Concatenates an array of strings |
MetStaT.ConvertToNumeric | Converts a matrix of strings to numeric values |
MetStaT.ConvertToNumericClasses | Convert value-types in an array or matrix (per column) to... |
MetStaT.CreateFileFromHeaderMatrix | Writes a matrix to file with column names and optionally row... |
MetStaT.CreateFileFromHeaderRowMatrix | Writes a matrix to file with row and column names, and... |
MetStaT.ExportDataToFile | Exports the results of supplied R expressions as text files... |
MetStaT.GetFreqTable | Tabulates the frequency of all unique values. |
MetStaT.GetPcTuples | Obtain all possible pairs of principal components out of a... |
MetStaT.KillAllDevices | Kills all currently active plot windows. |
MetStaT.mldivide | Matrix left hand division using a copy of the 'pracma'... |
MetStaT.mrdivide | Matrix right hand division using a copy of the 'pracma'... |
MetStaT.PlotToFile | Save results of R plotting expressions to files in a zip... |
MetStaT.ReadFileToHeaderMatrix | Reads a data file to a matrix. |
MetStaT.RemoveNaColumns | Removes all columns in a matrix that contain one or more NAs. |
MetStaT.ScalePip | Centering and scaling function |
MetStaT.TrimCustom | Limits an input string to a certain length |
MetStaT.WriteDataObjectToFile | Write data contained within an R object as character output... |
PCA.Calculate | Adapted version of R's base Principal Component Analysis... |
PCA.PlotLoadings | Loadings plot for the results of PCA.Calculate |
PCA.PlotScores | Score plot for the results of PCA.Calculate. |
QStat.Calculate | Global test for metabolic pathway differences between... |
QStat.PermutationTest | Accompanying permutation test for QStat.Calculate |
QStatX | Data matrix for QStat.Calculate example |
QStatY | Matrix for QStat.Calculate example |
RevNetJacobian | Example data for RevNetJacobianMethod |
RevNet.JacobianMethod | Reverse engineering of networks: Penalized Jacobian method |
RevNetTimeLagged | Example data for RevNetTimeLaggedMethod |
RevNet.TimeLaggedMethod | Reverse engineering of networks: Time-lagged correlation... |
RevNetZeroSlopes | Example data for RevNetZeroSlopesMethod |
RevNet.ZeroSlopesMethod | Reverse engineering of networks: zero slopes method |
SteadyState | Example data for RevNetJacobianMethod |
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