sdfStream.joanna: Adjusted sdfStream version for databases that store their...

In MetaDBparse: Annotate Mass over Charge Values with Databases and Formula Prediction

Description

Adjusted from existing function to extract the columns needed for MetaDBparse database format

Usage

sdfStream.joanna(
  input,
  output,
  append = FALSE,
  fct,
  Nlines = 10000,
  startline = 1,
  restartNlines = 10000,
  silent = FALSE,
  ...
)

Arguments

input	input SDF file
output	output CSV file to write to
append	Append to existing CSV file or start anew?, Default: FALSE
fct	Function to apply to each object to get the wanted columns
Nlines	Lines to read in one go?, Default: 10000
startline	Start at line, Default: 1
restartNlines	Restart after x lines, Default: 10000
silent	Suppress warnings?, Default: FALSE
...	Other arguments

Value

Nothing, writes csv version of given SDF files to disk

MetaDBparse documentation built on May 3, 2021, 5:09 p.m.