CSKAT: Small-sample SKAT for correlated (continuous) data ('c'...
In MiRKAT: Microbiome Regression-Based Kernel Association Tests
CSKAT R Documentation
Small-sample SKAT for correlated (continuous) data ('c' stands for 'correlated'). Called within GLMM-MiRKAT.
Description
Compute the adjusted score statistic and p-value
Usage
CSKAT(lmer.obj, Ks)
Arguments
lmer.obj
A fitted lme4 object (model under H0)
Ks
A kernel matrix or list of kernels, quantifying the similarities between samples.
Value
- p.value
Association p-values
- Q.adj
Adjusted score statistics
Author(s)
Nehemiah Wilson, Anna Plantinga, Xiang Zhan, Jun Chen.
References
Zhan X, et al. (2018) A small-sample kernel association test for correlated data with application to microbiome association studies.
Genet Epidemiol.
MiRKAT documentation built on March 7, 2023, 5:55 p.m.
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| CSKAT | R Documentation |
Small-sample SKAT for correlated (continuous) data ('c' stands for 'correlated'). Called within GLMM-MiRKAT.
Description
Compute the adjusted score statistic and p-value
Usage
CSKAT(lmer.obj, Ks)
Arguments
lmer.obj |
A fitted lme4 object (model under H0) |
Ks |
A kernel matrix or list of kernels, quantifying the similarities between samples. |
Value
- p.value
Association p-values
- Q.adj
Adjusted score statistics
Author(s)
Nehemiah Wilson, Anna Plantinga, Xiang Zhan, Jun Chen.
References
Zhan X, et al. (2018) A small-sample kernel association test for correlated data with application to microbiome association studies. Genet Epidemiol.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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