inner.CSKAT: Inner Function for CSKAT, Correlated Sequence Kernel...
In MiRKAT: Microbiome Regression-Based Kernel Association Tests
inner.CSKAT R Documentation
Inner Function for CSKAT, Correlated Sequence Kernel Association Test
Description
Small-sample SKAT for correlated (continuous) data ('c' stands for 'correlated'). Computes the adjusted score statistic and p-value.
Usage
inner.CSKAT(lmer.obj, K)
Arguments
lmer.obj
A fitted lme4 object (model under H0)
K
the kernel matrix, which quantifies the similarities between samples
Value
- p.value
association p-value
- Q.adj
adjusted score statistic
References
Zhan X, et al. (2018) A small-sample kernel association test for correlated data with application to microbiome association studies.
Genet Epidemiol., submitted.
MiRKAT documentation built on March 7, 2023, 5:55 p.m.
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| inner.CSKAT | R Documentation |
Inner Function for CSKAT, Correlated Sequence Kernel Association Test
Description
Small-sample SKAT for correlated (continuous) data ('c' stands for 'correlated'). Computes the adjusted score statistic and p-value.
Usage
inner.CSKAT(lmer.obj, K)
Arguments
lmer.obj |
A fitted lme4 object (model under H0) |
K |
the kernel matrix, which quantifies the similarities between samples |
Value
- p.value
association p-value
- Q.adj
adjusted score statistic
References
Zhan X, et al. (2018) A small-sample kernel association test for correlated data with application to microbiome association studies. Genet Epidemiol., submitted.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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