Files in MicroMoB

Discrete Time Simulation of Mosquito-Borne Pathogen Transmission

NEWS.md README.md R/visitor_interface.R R/bloodmeal.R R/other_interface.R R/aquatic_trace_API.R R/mosquito_interface.R R/aquatic_trace.R R/other_trace.R R/visitor_trace.R R/mosquito_BQ.R R/humans_SIP.R R/humans_MOI.R R/mosquito_trace.R R/MicroMoB.R R/mosquito_RM_API.R R/observation.R R/utils_internal.R R/humans_SIS.R R/humans_SIR.R R/ModelObject.R R/aquatic_BH.R R/api_mosquito.R R/mosquito_RM.R R/humans_interface.R R/aquatic_interface.R R/utils.R R/aquatic_BH_API.R inst/spp.R inst/doc/BH_aqua.R inst/doc/MOI_human.R inst/doc/Contributing.R inst/doc/BH_aqua.Rmd inst/doc/bloodmeal.R inst/doc/RM_mosquito.Rmd inst/doc/Contributing.Rmd inst/doc/RM_transmission.Rmd inst/doc/MicroMoB.Rmd inst/doc/Advanced.R inst/doc/BQ_mosquito.R inst/doc/Advanced.Rmd inst/doc/RM_transmission.R inst/doc/MicroMoB.R inst/doc/BQ_mosquito.Rmd inst/doc/MOI_human.Rmd inst/doc/bloodmeal.Rmd inst/doc/RM_mosquito.R inst/plumber/mosquito/plumber.R tests/testthat.R tests/testthat/test-utils_internal.R tests/testthat/test-mosquito_RM.R tests/testthat/test-humans_MOI.R tests/testthat/test-aquatic_BH.R tests/testthat/test-mosquito_RM_API.R tests/testthat/test-utils.R tests/testthat/test-other_trace.R tests/testthat/test-aquatic_BH_API.R tests/testthat/test-2PatchRM.R tests/testthat/test-visitor_trace.R tests/testthat/test-humans_SIS.R tests/testthat/test-humans_SIR.R tests/testthat/test-humans_SIP.R tests/testthat/test-mosquito_trace.R tests/testthat/test-aquatic_trace_API.R tests/testthat/test-bloodmeal.R tests/testthat/test-observation.R tests/testthat/test-aquatic_trace.R tests/testthat/test-ModelObject.R tests/testthat/test-mosquito_BQ.R tests/testthat/test-api_mosquitoes_plumber.R vignettes/BH_aqua.Rmd vignettes/RM_mosquito.Rmd vignettes/Contributing.Rmd vignettes/RM_transmission.Rmd vignettes/MicroMoB.Rmd vignettes/Advanced.Rmd vignettes/BQ_mosquito.Rmd vignettes/MOI_human.Rmd vignettes/bloodmeal.Rmd man/compute_H.Rd man/get_K_aqua_BH.Rd man/output_aqua.Rd man/step_aqua.BH.Rd man/compute_f.RM.Rd man/step_mosquitoes.RM_stochastic.Rd man/compute_bloodmeal.Rd man/divmod.Rd man/time_varying_parameter.Rd man/step_mosquitoes.BQ_stochastic.Rd man/get_config_aqua_trace.Rd man/compute_oviposit.RM_deterministic.Rd man/get_molt_aqua_BH.Rd man/strata_to_residency_proportion.Rd man/compute_wf.SIR.Rd man/get_surv_aqua_BH.Rd man/compute_Wd.Rd man/compute_emergents.Rd man/get_config_humans_MOI.Rd man/compute_oviposit.RM.Rd man/draw_multinom.Rd man/set_kappa_mosquito_RM.Rd man/step_humans.Rd man/compute_Psi.Rd man/get_config_mosquito_trace.Rd man/compute_q.BQ.Rd man/compute_Z.BQ.Rd man/setup_mosquito_RM.Rd man/sample_stochastic_matrix.Rd man/compute_O.Rd man/get_config_aqua_BH.Rd man/get_config_visitor_trace.Rd man/compute_O.trace.Rd man/step_mosquitoes.Rd man/compute_q.trace.Rd man/compute_wf.Rd man/step_humans.SIP_stochastic.Rd man/compute_oviposit.BQ.Rd man/compute_wf.SIP.Rd man/set_psi_mosquito_RM.Rd man/get_nu_mosquito_RM.Rd man/step_humans.MOI_deterministic.Rd man/set_K_aqua_BH.Rd man/step_mosquitoes.RM_deterministic.Rd man/sample_stochastic_vector.Rd man/setup_humans_MOI.Rd man/get_tnow.Rd man/compute_oviposit.BQ_stochastic.Rd man/step_humans.SIR_stochastic.Rd man/output_mosquitoes.trace.Rd man/compute_H.SIR.Rd man/step_humans.SIR.Rd man/compute_xd.trace.Rd man/step_humans.SIP_deterministic.Rd man/set_surv_aqua_BH.Rd man/compute_oviposit.Rd man/compute_x.SIS.Rd man/get_config_humans_SIS.Rd man/step_humans.MOI_stochastic.Rd man/compute_wf.MOI.Rd man/step_humans.SIR_deterministic.Rd man/time_patch_varying_parameter.Rd man/setup_humans_SIS.Rd man/compute_f.trace.Rd man/set_nu_mosquito_RM.Rd man/compute_wf.SIS.Rd man/compute_Psi.SIR.Rd man/observe_pfpr.SIS.Rd man/compute_Psi.SIP.Rd man/is_binary.Rd man/setup_humans_SIR.Rd man/set_lambda_aqua_trace.Rd man/step_humans.MOI.Rd man/get_config_mosquito_RM.Rd man/step_mosquitoes.trace.Rd man/step_aqua.trace.Rd man/get_q_mosquito_RM.Rd man/compute_H.MOI.Rd man/compute_Z.trace.Rd man/step_aqua.BH_stochastic.Rd man/api_config_global.Rd man/compute_H.SIS.Rd man/step_mosquitoes.RM.Rd man/compute_Psi.MOI.Rd man/step_aqua.Rd man/compute_Psi.SIS.Rd man/compute_oviposit.trace.Rd man/compute_bloodmeal_simple.Rd man/compute_Z.Rd man/compute_oviposit.BQ_deterministic.Rd man/compute_oviposit.RM_stochastic.Rd man/setup_aqua_trace.Rd man/step_aqua.BH_deterministic.Rd man/output_mosquitoes.Rd man/set_q_mosquito_RM.Rd man/observe_pfpr.Rd man/compute_f.BQ.Rd man/step_humans.SIP.Rd man/get_lambda_aqua_trace.Rd man/compute_x.SIP.Rd man/compute_f.Rd man/setup_mosquito_trace.Rd man/compute_x.MOI.Rd man/compute_xd.Rd man/make_MicroMoB.Rd man/get_tmax.Rd man/step_mosquitoes.BQ_deterministic.Rd man/output_aqua.BH.Rd man/compute_Wd.trace.Rd man/setup_visitor_trace.Rd man/approx_equal.Rd man/observe_pfpr.SIP.Rd man/set_molt_aqua_BH.Rd man/get_f_mosquito_RM.Rd man/get_p_mosquito_RM.Rd man/step_humans.SIS.Rd man/set_p_mosquito_RM.Rd man/compute_q.RM.Rd man/compute_H.SIP.Rd man/get_config_humans_SIR.Rd man/compute_Z.RM.Rd man/compute_q.Rd man/compute_emergents.trace_stochastic.Rd man/get_config_alternative_trace.Rd man/set_f_mosquito_RM.Rd man/compute_emergents.trace.Rd man/MicroMoB.Rd man/compute_emergents.trace_deterministic.Rd man/setup_aqua_BH.Rd man/setup_humans_SIP.Rd man/strata_to_residency_counts.Rd man/step_humans.SIS_stochastic.Rd man/setup_alternative_trace.Rd man/output_mosquitoes.RM.Rd man/get_kappa_mosquito_RM.Rd man/step_humans.SIS_deterministic.Rd man/get_psi_mosquito_RM.Rd man/step_mosquitoes.BQ.Rd man/output_aqua.trace.Rd man/get_eip_mosquito_RM.Rd man/compute_x.Rd man/setup_mosquito_BQ.Rd man/compute_x.SIR.Rd man/set_eip_mosquito_RM.Rd man/compute_emergents.BH.Rd man/distribute.Rd