fun_hairpin_check: Hairpin-structure sequence check function
In MicroSEC: Sequence Error Filter for Formalin-Fixed and Paraffin-Embedded Samples
View source: R/fun_hairpin_check.R
fun_hairpin_check R Documentation
Hairpin-structure sequence check function
Description
This function attempts to find hairpin structure sequences.
Usage
fun_hairpin_check(hairpin_seq_tmp, ref_seq, hairpin_length, hair)
Arguments
hairpin_seq_tmp
The sequence to be checked.
ref_seq
Reference sequence around the mutation.
hairpin_length
The temporal length of hairpin sequences.
hair
The length of sequences to be checked.
Value
list(hairpin_length, whether hairpin sequences exist or not)
MicroSEC documentation built on Sept. 11, 2024, 6:06 p.m.
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View source: R/fun_hairpin_check.R
| fun_hairpin_check | R Documentation |
Hairpin-structure sequence check function
Description
This function attempts to find hairpin structure sequences.
Usage
fun_hairpin_check(hairpin_seq_tmp, ref_seq, hairpin_length, hair)
Arguments
hairpin_seq_tmp |
The sequence to be checked. |
ref_seq |
Reference sequence around the mutation. |
hairpin_length |
The temporal length of hairpin sequences. |
hair |
The length of sequences to be checked. |
Value
list(hairpin_length, whether hairpin sequences exist or not)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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