msec_analyzed | R Documentation |
A dataset containing the information of eight mutations processed by the fun_homology function.
msec_analyzed
A list with 37 factors, each contains 29 variables
sample name
mutation type
altered chromosome
altered position
reference base
altered base
mutation locating repeat sequence
neighborhood sequence
read length
number of mutation supporting reads
number of soft-clipped reads
number of reads produced by hairpin structure
maximum 5'-supporting length
maximum 3'-supporting length
minimum supporting length
5'-farthest supported base from the mutated base
3'-farthest supported base from the mutated base
low quality base rate
low quality base rate of 5'- side
low quality base rate of 3'- side
rate of reads derived from homologous regions
rate of soft clipped reads
possibility of short-supporting length
possibility of 5'-supporting length
possibility of 3'-supporting length
filter 1
filter 2
filter 3
filter 4
filter 5
filter 6
filter 7
filter 8
any of filter 1-3
any of filter 1-4
any of filter 1-8
comment
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