fun_setting | R Documentation |
This function attempts to find the mutated bases in each read.
fun_setting(pre, post, neighbor_seq, neighbor_length, alt_length)
pre |
The 5' side bases of the sequence for searching. |
post |
The 3' side bases of the sequence for searching. |
neighbor_seq |
Short reference sequence around the mutation. |
neighbor_length |
The length from the mutation to the ends of the short reference sequence. |
alt_length |
The length of altered bases. |
list(pre_search_length, post_search_length, peri_seq_1, peri_seq_2)
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