fun_repeat_check: Repeat check function.

In MicroSEC: Sequence Error Filter for Formalin-Fixed and Paraffin-Embedded Samples

Repeat check function.

Description

This function attempts to check the repetitive sequence around the mutation.

Usage

fun_repeat_check(rep_a, rep_b, ref_seq, ref_width, del)

Arguments

rep_a	The shorter sequence of Ref and Alt.
rep_b	The longer sequence of Ref and Alt.
ref_seq	Reference sequence around the mutation.
ref_width	Search length for ref_seq.
del	Insertion: 0, Deletion: 1

Value

list(pre_rep_status, post_rep_status, pre_rep_short, post_rep_short, homopolymer_status)

MicroSEC documentation built on Sept. 11, 2024, 6:06 p.m.