Nothing
# Test lake example
context("Ex script 3/9 (lake)")
test_that("Lake ex works",{
mix.filename <- system.file("extdata", "lake_consumer.csv", package = "MixSIAR")
mix <- load_mix_data(filename=mix.filename,
iso_names=c("d13C","d15N"),
factors=NULL,
fac_random=NULL,
fac_nested=NULL,
cont_effects="Secchi.Mixed")
source.filename <- system.file("extdata", "lake_sources.csv", package = "MixSIAR")
source <- load_source_data(filename=source.filename,
source_factors=NULL,
conc_dep=FALSE,
data_type="raw",
mix)
discr.filename <- system.file("extdata", "lake_discrimination.csv", package = "MixSIAR")
discr <- load_discr_data(filename=discr.filename, mix)
model_filename <- "MixSIAR_model.txt"
resid_err <- TRUE
process_err <- FALSE
write_JAGS_model(model_filename, resid_err, process_err, mix, source)
run <- list(chainLength=3, burn=1, thin=1, chains=3, calcDIC=TRUE)
invisible(capture.output(
jags.1 <- run_model(run, mix, source, discr, model_filename)
))
expect_is(jags.1,"rjags")
file.remove(model_filename)
})
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