library(MolgenisArmadillo)
To be able to test your package as a developer you can install your package using the MolgenisArmadillo. There are a few preconditions in other to use the install_packages function.
superuser
role.development
modeYou first need to login to the Armadillo (as superuser
)
armadillo.login("https://armadillo.dev.molgenis.org", "https://armadillo-minio.dev.molgenis.org") #> Error in armadillo.login("https://armadillo.dev.molgenis.org", "https://armadillo-minio.dev.molgenis.org"): unused argument ("https://armadillo-minio.dev.molgenis.org")
If you want to install a package on the Armadillo Rserver you can execute the following endpoint. The selected profile is always default
if none is specified.
armadillo.install_packages("data/packages/MolgenisArmadillo_1.1.0.9000.tar.gz") #> Error in httr::upload_file(path): file.exists(path) is not TRUE
In order to install the packages on a specific profile you can specify the profile.
armadillo.install_packages("data/packages/MolgenisArmadillo_1.1.0.9000.tar.gz", profile = "exposome")
You can install multiple packages as well by specifying a vector
armadillo.install_packages(c("data/packages/MolgenisArmadillo_1.1.0.9000.tar.gz", "data/packages/dsBase_6.1.0.9000.tar.gz"))
To be able to use new packages in the Armadillo you need to add them to the whitelist. You can do this by executing the following method.
armadillo.whitelist_packages("MolgenisArmadillo") #> Error in armadillo.whitelist_packages("MolgenisArmadillo"): could not find function "armadillo.whitelist_packages"
You are able to whilist mulitple packages as well using the following line:
armadillo.whitelist_packages(c("MolgenisArmadillo", "dsBase")) #> Error in armadillo.whitelist_packages(c("MolgenisArmadillo", "dsBase")): could not find function "armadillo.whitelist_packages"
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