MD5
          
        
          
            
            NEWS.md
          
        
          
            
            README.md
          
        
          
            
            NAMESPACE
          
        
          
            
            DESCRIPTION
          
        
          
            
            LICENSE
          
        
          
            
            R/NMwriteInitsOne.R
          
        
          
            
            R/padZeros.R
          
        
          
            
            R/NMsim_known.R
          
        
          
            
            R/NMsim_VarCov.R
          
        
          
            
            R/samplePars_mvrnorm.R
          
        
          
            
            R/dcastSe.R
          
        
          
            
            R/NMcreateMatLines.R
          
        
          
            
            R/checkTimes.R
          
        
          
            
            R/NMreadSimModTab.R
          
        
          
            
            R/NMsim_asis.R
          
        
          
            
            R/NMwriteInits.R
          
        
          
            
            R/NMctl.R
          
        
          
            
            R/writeTextFile.R
          
        
          
            
            R/NMsim_default.R
          
        
          
            
            R/typicalize.R
          
        
          
            
            R/NMsim_typical.R
          
        
          
            
            R/NMcreateDoses.R
          
        
          
            
            R/expandCovs.R
          
        
          
            
            R/samplePars.R
          
        
          
            
            R/inputArchive.R
          
        
          
            
            R/modTab.R
          
        
          
            
            R/message_dt.R
          
        
          
            
            R/NMsim_helpers.R
          
        
          
            
            R/NMsimCheckMod.R
          
        
          
            
            R/callNonmemDirect.R
          
        
          
            
            R/addClass.R
          
        
          
            
            R/NMwriteSizes.R
          
        
          
            
            R/NMrunLin.R
          
        
          
            
            R/NMsimTestConf.R
          
        
          
            
            R/NMgenPNM.R
          
        
          
            
            R/forestSummarize.R
          
        
          
            
            R/nameMultipleFiles.R
          
        
          
            
            R/NMwriteSectionOne.R
          
        
          
            
            R/cleaningPatterns.R
          
        
          
            
            R/seedFunDefault.R
          
        
          
            
            R/reportFailedRun.R
          
        
          
            
            R/deleteTmpDirs.R
          
        
          
            
            R/NMextractText.R
          
        
          
            
            R/NMsim_NWPRI.R
          
        
          
            
            R/summary_NMsimRes.R
          
        
          
            
            R/simPopEtas.R
          
        
          
            
            R/sampleParsSimpar.R
          
        
          
            
            R/readParsWide.R
          
        
          
            
            R/NMreadSimOne.R
          
        
          
            
            R/searchExecutable.R
          
        
          
            
            R/NMreadTabFast.R
          
        
          
            
            R/simpleCharArg.R
          
        
          
            
            R/NMseed.R
          
        
          
            
            R/NMsimModTab_utils.R
          
        
          
            
            R/NMupdateFn.R
          
        
          
            
            R/NWPRI_df.R
          
        
          
            
            R/modifyHelpers.R
          
        
          
            
            R/NMaddSamples.R
          
        
          
            
            R/NMreadSizes.R
          
        
          
            
            R/addResVar.R
          
        
          
            
            R/NMupdateInits.R
          
        
          
            
            R/addBlocks.R
          
        
          
            
            R/NMreplaceInits.R
          
        
          
            
            R/NMwriteFilters.R
          
        
          
            
            R/fnAppend.R
          
        
          
            
            R/getSystemType.R
          
        
          
            
            R/modifyModel.R
          
        
          
            
            R/findUpdated.R
          
        
          
            
            R/prettyMatLines.R
          
        
          
            
            R/prioritizePaths.R
          
        
          
            
            R/addEVID2.R
          
        
          
            
            R/completeCov.R
          
        
          
            
            R/zzz.R
          
        
          
            
            R/NMsimDataPrepare.R
          
        
          
            
            R/NMsim_EBE.R
          
        
          
            
            R/summarizeCovs.R
          
        
          
            
            R/addParType.R
          
        
          
            
            R/NMrunWin.R
          
        
          
            
            R/sampleCovs.R
          
        
          
            
            R/NMreadInits.R
          
        
          
            
            R/pasteFuns.R
          
        
          
            
            R/NMsimRes_utils.R
          
        
          
            
            R/NMsim.R
          
        
          
            
            R/NMreadSim.R
          
        
          
            
            R/samplePars_simpar.R
          
        
          
            
            R/forestDefineCovs.R
          
        
          
            
            R/NMreadSection.R
          
        
          
            
            R/NMexec.R
          
        
          
            
            R/genPhiFile.R
          
        
          
            
            R/NMexecDirectory.R
          
        
          
            
            inst/examples/data/xgxr2covs.csv
          
        
          
            
            inst/examples/data/xgxr12.csv
          
        
          
            
            inst/examples/data/xgxr2_flag0.csv
          
        
          
            
            inst/examples/data/xgxr032_bs.csv
          
        
          
            
            inst/examples/data/xgxr2_flag0_meta.txt
          
        
          
            
            inst/examples/data/xgxr2_meta.txt
          
        
          
            
            inst/examples/data/xgxr2covs_meta.txt
          
        
          
            
            inst/examples/data/xgxr_pd.rds
          
        
          
            
            inst/examples/data/xgxr021_bs.rds
          
        
          
            
            inst/examples/data/xgxr021_bs.csv
          
        
          
            
            inst/examples/data/xgxr12.rds
          
        
          
            
            inst/examples/data/xgxr021_bs_meta.txt
          
        
          
            
            inst/examples/data/xgxr2.csv
          
        
          
            
            inst/examples/data/xgxr12_meta.txt
          
        
          
            
            inst/examples/data/xgxr2covs.rds
          
        
          
            
            inst/examples/data/xgxr032_bs.rds
          
        
          
            
            inst/examples/data/xgxr032_bs_meta.txt
          
        
          
            
            inst/examples/data/xgxr2_flag0.rds
          
        
          
            
            inst/examples/data/xgxr2.rds
          
        
          
            
            inst/examples/nonmem/xgxr021.cov
          
        
          
            
            inst/examples/nonmem/xgxr021.phi
          
        
          
            
            inst/examples/nonmem/xgxr033.phi
          
        
          
            
            inst/examples/nonmem/xgxr033.shk
          
        
          
            
            inst/examples/nonmem/xgxr033.ext
          
        
          
            
            inst/examples/nonmem/xgxr032_etas.txt
          
        
          
            
            inst/examples/nonmem/xgxr134.lst
          
        
          
            
            inst/examples/nonmem/xgxr046_res.txt
          
        
          
            
            inst/examples/nonmem/xgxr033.pnm
          
        
          
            
            inst/examples/nonmem/xgxr032_res.txt
          
        
          
            
            inst/examples/nonmem/xgxr134_etas.txt
          
        
          
            
            inst/examples/nonmem/xgxr046.mod
          
        
          
            
            inst/examples/nonmem/xgxr032.cor
          
        
          
            
            inst/examples/nonmem/xgxr134.ext
          
        
          
            
            inst/examples/nonmem/xgxr044.pnm
          
        
          
            
            inst/examples/nonmem/xgxr032.cov
          
        
          
            
            inst/examples/nonmem/xgxr046_etas.txt
          
        
          
            
            inst/examples/nonmem/xgxr033.mod
          
        
          
            
            inst/examples/nonmem/xgxr032_input.rds
          
        
          
            
            inst/examples/nonmem/xgxr134.coi
          
        
          
            
            inst/examples/nonmem/xgxr021.ext
          
        
          
            
            inst/examples/nonmem/xgxr046.shk
          
        
          
            
            inst/examples/nonmem/xgxr021.coi
          
        
          
            
            inst/examples/nonmem/xgxr046.ext
          
        
          
            
            inst/examples/nonmem/xgxr032.ext
          
        
          
            
            inst/examples/nonmem/xgxr033.coi
          
        
          
            
            inst/examples/nonmem/xgxr046_input.rds
          
        
          
            
            inst/examples/nonmem/xgxr134_res.txt
          
        
          
            
            inst/examples/nonmem/xgxr046.phi
          
        
          
            
            inst/examples/nonmem/xgxr032.lst
          
        
          
            
            inst/examples/nonmem/xgxr134.cor
          
        
          
            
            inst/examples/nonmem/xgxr033_etas.txt
          
        
          
            
            inst/examples/nonmem/xgxr033_input.rds
          
        
          
            
            inst/examples/nonmem/xgxr033_res.txt
          
        
          
            
            inst/examples/nonmem/xgxr044.mod
          
        
          
            
            inst/examples/nonmem/xgxr021.mod
          
        
          
            
            inst/examples/nonmem/xgxr021.shk
          
        
          
            
            inst/examples/nonmem/xgxr032.phi
          
        
          
            
            inst/examples/nonmem/xgxr021_res.txt
          
        
          
            
            inst/examples/nonmem/xgxr032.mod
          
        
          
            
            inst/examples/nonmem/xgxr032.shk
          
        
          
            
            inst/examples/nonmem/xgxr044_input.rds
          
        
          
            
            inst/examples/nonmem/xgxr046.lst
          
        
          
            
            inst/examples/nonmem/xgxr033.cor
          
        
          
            
            inst/examples/nonmem/xgxr021_input.rds
          
        
          
            
            inst/examples/nonmem/xgxr021.cor
          
        
          
            
            inst/examples/nonmem/xgxr134.shk
          
        
          
            
            inst/examples/nonmem/xgxr134.cov
          
        
          
            
            inst/examples/nonmem/xgxr134.mod
          
        
          
            
            inst/examples/nonmem/xgxr134.phi
          
        
          
            
            inst/examples/nonmem/xgxr032.coi
          
        
          
            
            inst/examples/nonmem/xgxr132.mod
          
        
          
            
            inst/examples/nonmem/xgxr033.cov
          
        
          
            
            inst/examples/nonmem/xgxr021.lst
          
        
          
            
            inst/examples/nonmem/xgxr033.lst
          
        
          
            
            inst/examples/derived/dat_sim1.rds
          
        
          
            
            inst/examples/derived/dat_sim1.csv
          
        
          
            
            inst/examples/outputs/example_table_exposure.html
          
        
          
            
            inst/examples/outputs/exdf_known_check.png
          
        
          
            
            inst/examples/outputs/exdf_known_time_ipred.png
          
        
          
            
            inst/examples/outputs/example_table_exposure.png
          
        
          
            
            inst/examples/outputs/example_table_exposure.pptx
          
        
          
            
            inst/examples/outputs/exdf_ci_pi_bs.png
          
        
          
            
            inst/examples/outputs/example_plot_sd.png
          
        
          
            
            inst/examples/outputs/example_table_exposure.docx
          
        
          
            
            inst/examples/outputs/exdf_pi_typ.png
          
        
          
            
            inst/examples/outputs/example_plot_pi.png
          
        
          
            
            inst/bash/wait_qsub.sh
          
        
          
            
            tests/testthat.R
          
        
          
            
            tests/testthat/test_NMgenPNM.R
          
        
          
            
            tests/testthat/test_genPhiFile.R
          
        
          
            
            tests/testthat/test_summarizeCovs.R
          
        
          
            
            tests/testthat/test_NMsim.R
          
        
          
            
            tests/testthat/test_simplePath.R
          
        
          
            
            tests/testthat/test_samplePars_mvrnorm.R
          
        
          
            
            tests/testthat/test_NMctl.R
          
        
          
            
            tests/testthat/test_nameMultipleFiles.R
          
        
          
            
            tests/testthat/test_NMwriteSizes.R
          
        
          
            
            tests/testthat/test_NMsimCheckMod.R
          
        
          
            
            tests/testthat/test_NMcreateDoses.R
          
        
          
            
            tests/testthat/test_NMseed.R
          
        
          
            
            tests/testthat/test_NMcreateMatLines.R
          
        
          
            
            tests/testthat/test_NMwriteInits.R
          
        
          
            
            tests/testthat/test_expandCovLists.R
          
        
          
            
            tests/testthat/test_NMsim_default.R
          
        
          
            
            tests/testthat/test_NMaddSamples.R
          
        
          
            
            tests/testthat/test_addResVar.R
          
        
          
            
            tests/testthat/test_NMreadParsWide.R
          
        
          
            
            tests/testthat/test_addEVID2.R
          
        
          
            
            tests/testthat/test_sampleParsSimpar.R
          
        
          
            
            tests/testthat/test_NMreplaceInits.R
          
        
          
            
            tests/testthat/test_rbind_NMsimRes.R
          
        
          
            
            tests/testthat/test_NMsim_VarCov.R
          
        
          
            
            tests/testthat/test_NMreadSim.R
          
        
          
            
            tests/testthat/test_simPopEtas.R
          
        
          
            
            tests/testthat/test_NMsim_NWPRI.R
          
        
          
            
            tests/testthat/test_typicalize.R
          
        
          
            
            tests/testthat/test_NMwriteFilters.R
          
        
          
            
            tests/testthat/testData/data/xgxr2covs.csv
          
        
          
            
            tests/testthat/testData/data/xgxr12.csv
          
        
          
            
            tests/testthat/testData/data/xgxr1.csv
          
        
          
            
            tests/testthat/testData/data/pred_data1.rds
          
        
          
            
            tests/testthat/testData/data/pred_data1.csv
          
        
          
            
            tests/testthat/testData/data/xgxr2_meta.txt
          
        
          
            
            tests/testthat/testData/data/xgxr2covs_meta.txt
          
        
          
            
            tests/testthat/testData/data/xgxr12.rds
          
        
          
            
            tests/testthat/testData/data/xgxr021_parsWide.rds
          
        
          
            
            tests/testthat/testData/data/xgxr2.csv
          
        
          
            
            tests/testthat/testData/data/xgxr12_meta.txt
          
        
          
            
            tests/testthat/testData/data/xgxr2covs.rds
          
        
          
            
            tests/testthat/testData/data/pred_data1_meta.txt
          
        
          
            
            tests/testthat/testData/data/xgxr2.rds
          
        
          
            
            tests/testthat/testData/nonmem/xgxr021.cov
          
        
          
            
            tests/testthat/testData/nonmem/xgxr053.lst
          
        
          
            
            tests/testthat/testData/nonmem/iov_same.mod
          
        
          
            
            tests/testthat/testData/nonmem/xgxr011_fo1.txt
          
        
          
            
            tests/testthat/testData/nonmem/xgxr053.phi
          
        
          
            
            tests/testthat/testData/nonmem/xgxr021.phi
          
        
          
            
            tests/testthat/testData/nonmem/xgxr033.phi
          
        
          
            
            tests/testthat/testData/nonmem/xgxr033.shk
          
        
          
            
            tests/testthat/testData/nonmem/xgxr033.ext
          
        
          
            
            tests/testthat/testData/nonmem/xgxr134.lst
          
        
          
            
            tests/testthat/testData/nonmem/predu.vpt
          
        
          
            
            tests/testthat/testData/nonmem/xgxr032_res.txt
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr032.cor
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr032_sd1_NWPRI.mod
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr021com.mod
          
        
          
            
            tests/testthat/testData/nonmem/predu.tab
          
        
          
            
            tests/testthat/testData/nonmem/xgxr053.cov
          
        
          
            
            tests/testthat/testData/nonmem/xgxr032_input.rds
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr134.coi
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr057.cor
          
        
          
            
            tests/testthat/testData/nonmem/xgxr021.coi
          
        
          
            
            tests/testthat/testData/nonmem/predu.phi
          
        
          
            
            tests/testthat/testData/nonmem/xgxr025b_res.txt
          
        
          
            
            tests/testthat/testData/nonmem/xgxr041.mod
          
        
          
            
            tests/testthat/testData/nonmem/pred030.shk
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr057.coi
          
        
          
            
            tests/testthat/testData/nonmem/predu.vpd
          
        
          
            
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            tests/testthat/testData/nonmem/xgxr134.cor
          
        
          
            
            tests/testthat/testData/nonmem/example1.csv
          
        
          
            
            tests/testthat/testData/nonmem/xgxr134_input.rds
          
        
          
            
            tests/testthat/testData/nonmem/xgxr033_input.rds
          
        
          
            
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            tests/testthat/testData/nonmem/pred030.pnm
          
        
          
            
            tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/NMsimData_xgxr021_sd1_NMreadSim.csv
          
        
          
            
            tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.tab
          
        
          
            
            tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.mod
          
        
          
            
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