Files in NMsim
Seamless 'Nonmem' Simulation Platform
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/padZeros.R
R/NMsim_known.R
R/NMsim_VarCov.R
R/NMcreateMatLines.R
R/checkTimes.R
R/NMreadSimModTab.R
R/NMsim_asis.R
R/writeTextFile.R
R/NMsim_default.R
R/typicalize.R
R/NMsim_typical.R
R/NMcreateDoses.R
R/expandCovs.R
R/inputArchive.R
R/NMsim_helpers.R
R/NMsimCheckMod.R
R/addClass.R
R/NMsimTestConf.R
R/NMgenPNM.R
R/seedFunDefault.R
R/dtapply.R
R/NMsim_NWPRI.R
R/simPopEtas.R
R/sampleParsSimpar.R
R/readParsWide.R
R/NMreadSimOne.R
R/searchExecutable.R
R/simpleCharArg.R
R/NMseed.R
R/NMsimModTab_utils.R
R/NWPRI_df.R
R/modifyHelpers.R
R/addResVar.R
R/NMupdateInits.R
R/NMreplaceInits.R
R/getSystemType.R
R/findUpdated.R
R/prettyMatLines.R
R/addEVID2.R
R/completeCov.R
R/zzz.R
R/NMsim_EBE.R
R/addParType.R
R/NMrunWin.R
R/NMsimRes_utils.R
R/NMsim.R
R/NMreadSim.R
R/NMexec.R
R/genPhiFile.R
R/NMexecDirectory.R
inst/examples/data/xgxr12.csv
inst/examples/data/xgxr2_flag0.csv
inst/examples/data/xgxr032_bs.csv
inst/examples/data/xgxr2_flag0_meta.txt
inst/examples/data/xgxr2_meta.txt
inst/examples/data/xgxr_pd.rds
inst/examples/data/xgxr021_bs.rds
inst/examples/data/xgxr021_bs.csv
inst/examples/data/xgxr12.rds
inst/examples/data/xgxr021_bs_meta.txt
inst/examples/data/xgxr2.csv
inst/examples/data/xgxr12_meta.txt
inst/examples/data/xgxr032_bs.rds
inst/examples/data/xgxr032_bs_meta.txt
inst/examples/data/xgxr2_flag0.rds
inst/examples/data/xgxr2.rds
inst/examples/nonmem/xgxr021.cov
inst/examples/nonmem/xgxr021.phi
inst/examples/nonmem/xgxr033.phi
inst/examples/nonmem/xgxr033.shk
inst/examples/nonmem/xgxr033.ext
inst/examples/nonmem/xgxr032_etas.txt
inst/examples/nonmem/xgxr046_res.txt
inst/examples/nonmem/xgxr033.pnm
inst/examples/nonmem/xgxr032_res.txt
inst/examples/nonmem/xgxr046.mod
inst/examples/nonmem/xgxr032.cor
inst/examples/nonmem/xgxr044.pnm
inst/examples/nonmem/xgxr032.cov
inst/examples/nonmem/xgxr046_etas.txt
inst/examples/nonmem/xgxr033.mod
inst/examples/nonmem/xgxr032_input.rds
inst/examples/nonmem/xgxr021.ext
inst/examples/nonmem/xgxr046.shk
inst/examples/nonmem/xgxr021.coi
inst/examples/nonmem/xgxr046.ext
inst/examples/nonmem/xgxr032.ext
inst/examples/nonmem/xgxr033.coi
inst/examples/nonmem/xgxr046_input.rds
inst/examples/nonmem/xgxr046.phi
inst/examples/nonmem/xgxr032.lst
inst/examples/nonmem/xgxr033_etas.txt
inst/examples/nonmem/xgxr033_input.rds
inst/examples/nonmem/xgxr033_res.txt
inst/examples/nonmem/xgxr044.mod
inst/examples/nonmem/xgxr021.mod
inst/examples/nonmem/xgxr021.shk
inst/examples/nonmem/xgxr032.phi
inst/examples/nonmem/xgxr021_res.txt
inst/examples/nonmem/xgxr032.mod
inst/examples/nonmem/xgxr032.shk
inst/examples/nonmem/xgxr044_input.rds
inst/examples/nonmem/xgxr046.lst
inst/examples/nonmem/xgxr033.cor
inst/examples/nonmem/xgxr021_input.rds
inst/examples/nonmem/xgxr021.cor
inst/examples/nonmem/xgxr032.coi
inst/examples/nonmem/xgxr033.cov
inst/examples/nonmem/xgxr021.lst
inst/examples/nonmem/xgxr033.lst
inst/examples/derived/dat_sim1.rds
inst/examples/derived/dat_sim1.csv
inst/examples/outputs/example_table_exposure.html
inst/examples/outputs/exdf_known_check.png
inst/examples/outputs/exdf_known_time_ipred.png
inst/examples/outputs/example_table_exposure.png
inst/examples/outputs/example_table_exposure.pptx
inst/examples/outputs/exdf_ci_pi_bs.png
inst/examples/outputs/example_plot_sd.png
inst/examples/outputs/example_table_exposure.docx
inst/examples/outputs/exdf_pi_typ.png
inst/examples/outputs/example_plot_pi.png
tests/testthat.R
tests/testthat/test_NMgenPNM.R
tests/testthat/test_NMsim.R
tests/testthat/test_NMcreateDoses.R
tests/testthat/test_expandCovs.R
tests/testthat/test_NMseed.R
tests/testthat/test_NMsim_default.R
tests/testthat/test_addResVar.R
tests/testthat/test_NMreadParsWide.R
tests/testthat/test_addEVID2.R
tests/testthat/test_sampleParsSimpar.R
tests/testthat/test_rbind_NMsimRes.R
tests/testthat/test_NMreadSim.R
tests/testthat/test_simPopEtas.R
tests/testthat/test_NMsim_NWPRI.R
tests/testthat/testData/data/xgxr2covs.csv
tests/testthat/testData/data/xgxr12.csv
tests/testthat/testData/data/xgxr1.csv
tests/testthat/testData/data/xgxr2_meta.txt
tests/testthat/testData/data/xgxr2covs_meta.txt
tests/testthat/testData/data/xgxr12.rds
tests/testthat/testData/data/xgxr021_parsWide.rds
tests/testthat/testData/data/xgxr2.csv
tests/testthat/testData/data/xgxr12_meta.txt
tests/testthat/testData/data/xgxr2covs.rds
tests/testthat/testData/data/xgxr2.rds
tests/testthat/testData/nonmem/xgxr021.cov
tests/testthat/testData/nonmem/xgxr032.xml
tests/testthat/testData/nonmem/xgxr021.phi
tests/testthat/testData/nonmem/xgxr033.phi
tests/testthat/testData/nonmem/xgxr033.shk
tests/testthat/testData/nonmem/xgxr033.ext
tests/testthat/testData/nonmem/xgxr134.lst
tests/testthat/testData/nonmem/xgxr032.msf
tests/testthat/testData/nonmem/xgxr021.msf
tests/testthat/testData/nonmem/xgxr032_res.txt
tests/testthat/testData/nonmem/xgxr134_etas.txt
tests/testthat/testData/nonmem/xgxr032.cor
tests/testthat/testData/nonmem/xgxr134.ext
tests/testthat/testData/nonmem/xgxr032.cov
tests/testthat/testData/nonmem/xgxr021_SMAT.msf
tests/testthat/testData/nonmem/xgxr134_ETAS.msf
tests/testthat/testData/nonmem/xgxr134.xml
tests/testthat/testData/nonmem/xgxr033.mod
tests/testthat/testData/nonmem/xgxr032_input.rds
tests/testthat/testData/nonmem/xgxr033.xml
tests/testthat/testData/nonmem/xgxr134.coi
tests/testthat/testData/nonmem/xgxr021.ext
tests/testthat/testData/nonmem/xgxr021.coi
tests/testthat/testData/nonmem/xgxr025b_res.txt
tests/testthat/testData/nonmem/xgxr134.msf
tests/testthat/testData/nonmem/xgxr032.ext
tests/testthat/testData/nonmem/xgxr033.coi
tests/testthat/testData/nonmem/xgxr025_input.rds
tests/testthat/testData/nonmem/xgxr025.lst
tests/testthat/testData/nonmem/xgxr134_res.txt
tests/testthat/testData/nonmem/xgxr032.lst
tests/testthat/testData/nonmem/xgxr021_RMAT.msf
tests/testthat/testData/nonmem/xgxr025.mod
tests/testthat/testData/nonmem/xgxr134.cor
tests/testthat/testData/nonmem/xgxr134_input.rds
tests/testthat/testData/nonmem/xgxr033_input.rds
tests/testthat/testData/nonmem/xgxr033_res.txt
tests/testthat/testData/nonmem/xgxr025c_res.txt
tests/testthat/testData/nonmem/xgxr021.mod
tests/testthat/testData/nonmem/xgxr025.ext
tests/testthat/testData/nonmem/xgxr033.msf
tests/testthat/testData/nonmem/xgxr032.phi
tests/testthat/testData/nonmem/xgxr021_res.txt
tests/testthat/testData/nonmem/xgxr032_ETAS.msf
tests/testthat/testData/nonmem/xgxr032.mod
tests/testthat/testData/nonmem/xgxr025.xml
tests/testthat/testData/nonmem/xgxr025.phi
tests/testthat/testData/nonmem/xgxr033.cor
tests/testthat/testData/nonmem/xgxr021_input.rds
tests/testthat/testData/nonmem/xgxr021.cor
tests/testthat/testData/nonmem/xgxr134.shk
tests/testthat/testData/nonmem/xgxr134.cov
tests/testthat/testData/nonmem/xgxr134.mod
tests/testthat/testData/nonmem/xgxr033_ETAS.msf
tests/testthat/testData/nonmem/xgxr134.phi
tests/testthat/testData/nonmem/xgxr021_ETAS.msf
tests/testthat/testData/nonmem/xgxr032.coi
tests/testthat/testData/nonmem/xgxr021.ctl
tests/testthat/testData/nonmem/xgxr033.cov
tests/testthat/testData/nonmem/xgxr025a_res.txt
tests/testthat/testData/nonmem/xgxr021.lst
tests/testthat/testData/nonmem/xgxr033.lst
tests/testthat/testData/nonmem/xgxr021.xml
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/NMsimData_xgxr021_sd1_NMreadSim.csv
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.tab
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.mod
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.xml
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/NMsimData_xgxr021_sd1_NMreadSim.rds
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.ext
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim.lst
tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim/xgxr021_sd1_NMreadSim_input.rds
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01_paths.rds
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01_paths.rds
tests/testthat/testData/nonmem/NMsim/NMsim_xgxr021_default_01_paths_res.fst
tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail_paths.rds
tests/testthat/testData/nonmem/NMsim/NMsim_xgxr021_default_01_paths.rds
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01_paths_res.fst
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01_paths_res.fst
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/xgxr021_default_01.xml
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/xgxr021_default_01.tab
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/xgxr021_default_01.lst
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/xgxr021_default_01.mod
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/xgxr021_default_01.ext
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/NMsimData_xgxr021_default_01.csv
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/NMsimData_xgxr021_default_01.fst
tests/testthat/testData/nonmem/NMsim/xgxr021_default_01/xgxr021_default_01_input.rds
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsim_xgxr025_noname.xml
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsim_xgxr025_noname.lst
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsim_xgxr025_noname_input.rds
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsim_xgxr025_noname.tab
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsim_xgxr025_noname.ext
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsimData_xgxr025_noname.csv
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsimData_xgxr025_noname.rds
tests/testthat/testData/nonmem/NMsim/xgxr025_noname/NMsim_xgxr025_noname.mod
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01_input.rds
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01.xml
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01.ext
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01.tab
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01.mod
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01.lst
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/NMsimData_xgxr021_known_01.fst
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/xgxr021_known_01_input.phi
tests/testthat/testData/nonmem/NMsim/xgxr021_known_01/NMsimData_xgxr021_known_01.csv
tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/xgxr021_nmtranfail.mod
tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/xgxr021_nmtranfail_input.rds
tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/NMsimData_xgxr021_nmtranfail.csv
tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/NMsimData_xgxr021_nmtranfail.rds
tests/testthat/testData/nonmem/xgxr033.dir1/model_NMrun_translation.txt
tests/testthat/testData/nonmem/xgxr033.dir1/command.txt
tests/testthat/testData/nonmem/xgxr033.dir1/modelfit.log
tests/testthat/testData/nonmem/xgxr033.dir1/raw_results_structure
tests/testthat/testData/nonmem/xgxr033.dir1/PsN_execute_plots.Rmd
tests/testthat/testData/nonmem/xgxr033.dir1/raw_results_xgxr033.csv
tests/testthat/testData/nonmem/xgxr033.dir1/meta.yaml
tests/testthat/testData/nonmem/xgxr033.dir1/version_and_option_info.txt
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.mod
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.xml
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.cnv
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.cov
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.coi
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.cor
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/stats-runs.csv
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.cpu
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.clt
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.shm
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/xgxr2.csv
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.lst
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.phi
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/xgxr033_res.txt
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/xgxr033.msf
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.ext
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/fort.2002
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/xgxr033_ETAS.msf
tests/testthat/testData/nonmem/xgxr033.dir1/NM_run1/psn.shk
tests/testthat/testData/simres/xgxr021_sd1_NMreadSim_ResultsData.fst
tests/testthat/testData/simres/xgxr021_sd1_NMreadSim_MetaData.rds
tests/testthat/simres/xgxr025_sd1_MetaData.rds
tests/testthat/simulate-results/xgxr032_NWPRI_ResultsData.fst
tests/testthat/simulate-results/xgxr032_NWPRI_MetaData.rds
tests/testthat/testReference/NMcreateDoses_07.rds
tests/testthat/testReference/NMcreateDoses_03.rds
tests/testthat/testReference/NMseed_01.rds
tests/testthat/testReference/addEVID2_09.rds
tests/testthat/testReference/rbind_NMsimRes_01.rds
tests/testthat/testReference/addEVID2_14.rds
tests/testthat/testReference/NMcreateDoses_04e.rds
tests/testthat/testReference/NMsim_02.rds
tests/testthat/testReference/addEVID2_10.rds
tests/testthat/testReference/NMsim_10.rds
tests/testthat/testReference/addEVID2_05.rds
tests/testthat/testReference/addEVID2_07.rds
tests/testthat/testReference/NMcreateDoses_13.rds
tests/testthat/testReference/addEVID2_08.rds
tests/testthat/testReference/NMsim_04.rds
tests/testthat/testReference/simPopEtas_01.rds
tests/testthat/testReference/addEVID2_13.rds
tests/testthat/testReference/addEVID2_03.rds
tests/testthat/testReference/NMsim_05.rds
tests/testthat/testReference/NMcreateDoses_16.rds
tests/testthat/testReference/NMcreateDoses_06.rds
tests/testthat/testReference/NMcreateDoses_04d.rds
tests/testthat/testReference/NMseed_02.rds
tests/testthat/testReference/addEVID2_02.rds
tests/testthat/testReference/NMcreateDoses_15.rds
tests/testthat/testReference/sampleParsSimpar_01.rds
tests/testthat/testReference/NMsim_EBE_03.rds
tests/testthat/testReference/NMcreateDoses_14.rds
tests/testthat/testReference/NMcreateDoses_10.rds
tests/testthat/testReference/NMreadSim_03.rds
tests/testthat/testReference/NMcreateDoses_09.rds
tests/testthat/testReference/NMsim_03.rds
tests/testthat/testReference/NMcreateDoses_04.rds
tests/testthat/testReference/expandCovs_03.rds
tests/testthat/testReference/NMsim_VarCov_04.rds
tests/testthat/testReference/NMcreateDoses_05.rds
tests/testthat/testReference/NMsim_09.rds
tests/testthat/testReference/NMgenPNM_01.rds
tests/testthat/testReference/NMcreateDoses_02.rds
tests/testthat/testReference/NMsim_NWPRI_01.rds
tests/testthat/testReference/addEVID2_04.rds
tests/testthat/testReference/addEVID2_11.rds
tests/testthat/testReference/addEVID2_01.rds
tests/testthat/testReference/expandCovs_01.rds
tests/testthat/testReference/addEVID2_06.rds
tests/testthat/testReference/NMcreateDoses_11.rds
tests/testthat/testReference/NMcreateDoses_08.rds
tests/testthat/testReference/NMsim_11.rds
tests/testthat/testReference/NMreadSim_01.rds
tests/testthat/testReference/NMreadSim_02.rds
tests/testthat/testReference/NMseed_03.rds
tests/testthat/testReference/NMcreateDoses_04b.rds
tests/testthat/testReference/NMcreateDoses_01.rds
tests/testthat/testReference/addEVID2_16.rds
tests/testthat/testReference/NMreadParsWide_01.rds
tests/testthat/testReference/NMsim_01.rds
tests/testthat/testReference/addEVID2_12.rds
tests/testthat/testReference/addEVID2_15.rds
tests/testthat/testReference/NMcreateDoses_12.rds
tests/testthat/testReference/expandCovs_02.rds
tests/testthat/testReference/NMsim_06.rds
man/overwrite.Rd
man/NMrunLin.Rd
man/NMsim_NWPRI.Rd
man/readParsWide.Rd
man/NMsim_known.Rd
man/NMsim_VarCov.Rd
man/NMreplaceInits.Rd
man/add.Rd
man/NMexecDirectory.Rd
man/NMcreateDoses.Rd
man/writeTextFile.Rd
man/findUpdated.Rd
man/genPhiFile.Rd
man/NMsimCheckMod.Rd
man/NMupdateInits.Rd
man/sampleParsSimpar.Rd
man/NMreadSimModTab.Rd
man/NMsim_EBE.Rd
man/simpleCharArg.Rd
man/NMsimModTabOperations.Rd
man/addEVID2.Rd
man/addResVar.Rd
man/NMsim.Rd
man/prettyMatLines.Rd
man/dtapply.Rd
man/NMreadSimRes.Rd
man/completeCov.Rd
man/expandCovs.Rd
man/NMsim_default.Rd
man/NMreadSimModTabOne.Rd
man/NMsim_asis.Rd
man/callNonmemDirect.Rd
man/checkTimes.Rd
man/NMexec.Rd
man/NMsim_typical.Rd
man/NMcreateMatLines.Rd
man/NMseed.Rd
man/cleanStrings.Rd
man/padZeros.Rd
man/simPopEtas.Rd
man/NWPRI_df.Rd
man/NMreadSimResOne.Rd
man/NMsimResOperations.Rd
man/NMreadSim.Rd
man/inputArchiveDefault.Rd
man/NMgenPNM.Rd
man/NMsimTestConf.Rd
man/figures/NMsimlogo.svg
man/figures/NMsimlogo_alternate.svg
man/figures/NMsimlogo_alternate.png
man/figures/NMsimlogo.png
man/figures/README-simple-sim-1.png
man/figures/NMsimlogo240.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-5-1.png
