BerMNPP_MCMC2: MCMC Sampling for Bernoulli Population of multiple historical...

In NPP: Normalized Power Prior Bayesian Analysis

MCMC Sampling for Bernoulli Population of multiple historical data using Normalized Power Prior

Description

Multiple historical data are combined individually. The NPP of multiple historical data is the product of the NPP of each historical data. Conduct posterior sampling for Bernoulli population with normalized power prior. For the power parameter \delta, a Metropolis-Hastings algorithm with either independence proposal, or a random walk proposal on its logit scale is used. For the model parameter p, Gibbs sampling is used.

Usage

BerMNPP_MCMC2(n0, y0, n, y, prior_p, prior_delta_alpha, prior_delta_beta,
              prop_delta_alpha, prop_delta_beta, delta_ini, prop_delta,
              rw_delta, nsample, burnin, thin)

Arguments

n0	a non-negative integer vector: number of trials in historical data.
y0	a non-negative integer vector: number of successes in historical data.
n	a non-negative integer: number of trials in the current data.
y	a non-negative integer: number of successes in the current data.
prior_p	a vector of the hyperparameters in the prior distribution Beta(\alpha, \beta) for p.
prior_delta_alpha	a vector of the hyperparameter \alpha in the prior distribution Beta(\alpha, \beta) for each \delta.
prior_delta_beta	a vector of the hyperparameter \beta in the prior distribution Beta(\alpha, \beta) for each \delta.
prop_delta_alpha	a vector of the hyperparameter \alpha in the proposal distribution Beta(\alpha, \beta) for each \delta.
prop_delta_beta	a vector of the hyperparameter \beta in the proposal distribution Beta(\alpha, \beta) for each \delta.
delta_ini	the initial value of \delta in MCMC sampling.
prop_delta	the class of proposal distribution for \delta.
rw_delta	the stepsize (variance of the normal distribution) for the random walk proposal of logit \delta. Only applicable if prop_delta = 'RW'.
nsample	specifies the number of posterior samples in the output.
burnin	the number of burn-ins. The output will only show MCMC samples after burnin.
thin	the thinning parameter in MCMC sampling.

Details

The outputs include posteriors of the model parameter(s) and power parameter, acceptance rate in sampling \delta. The normalized power prior distribution is

\pi_0(\delta)\prod_{k=1}^{K}\frac{\pi_0(\theta)L(\theta|D_{0k})^{\delta_{k}}}{\int \pi_0(\theta)L(\theta|D_{0k})^{\delta_{k}} d\theta}.

Here \pi_0(\delta) and \pi_0(\theta) are the initial prior distributions of \delta and \theta, respectively. L(\theta|D_{0k}) is the likelihood function of historical data D_{0k}, and \delta_k is the corresponding power parameter.

Value

A list of class "NPP" with three elements:

acceptrate	the acceptance rate in MCMC sampling for \delta using Metropolis-Hastings algorithm.
p	posterior of the model parameter p.
delta	posterior of the power parameter \delta.

Author(s)

Qiang Zhang [e-mail]

References

Ibrahim, J.G., Chen, M.-H., Gwon, Y. and Chen, F. (2015). The Power Prior: Theory and Applications. Statistics in Medicine 34:3724-3749.

Duan, Y., Ye, K. and Smith, E.P. (2006). Evaluating Water Quality: Using Power Priors to Incorporate Historical Information. Environmetrics 17:95-106.

See Also

BerMNPP_MCMC1; BerOMNPP_MCMC1; BerOMNPP_MCMC2

Examples

BerMNPP_MCMC2(n0 = c(275, 287), y0 = c(92, 125), n = 39, y = 17,
              prior_p=c(1/2,1/2), prior_delta_alpha=c(1/2,1/2),
              prior_delta_beta=c(1/2,1/2), prop_delta_alpha=c(1,1)/2,
              prop_delta_beta=c(1,1)/2, delta_ini=NULL, prop_delta="IND",
              nsample = 2000, burnin = 500, thin = 2)

NPP documentation built on Sept. 18, 2023, 5:18 p.m.