interactor_map: interactor_map

In OmicInt: Omics Network Exploration

Description

interactor_map uses information mined from STRING database to map experimental, predicted, or referenced interactions to see if there are any interactors in the set of significantly changed genes and how they are linked. The function requires a data frame prepared by score_genes. The output is a plot depicting interaction map.

Usage

interactor_map(data)

Arguments

data	requires a data frame containing gene names as row names and a column with LFC values; class - data frame

Value

interaction map/plot; class - plot

Examples

 ## Not run: 
path_to_test_data<- system.file("extdata", "test_data.tabular", package="OmicInt")
# basic usage of interactor_map
df<-utils::read.table(path_to_test_data)
interactor_map(df)

## End(Not run)

OmicInt documentation built on Oct. 28, 2021, 5:09 p.m.