miRNA_summary_predicted: miRNA_summary_predicted

In OmicInt: Omics Network Exploration

Description

miRNA_summary_predicted function provides information on genes that have predicted/inferred miRNA regulating them. The function checks genes against predicted miRNA target database image and provides various plots to assess emerging data features. The user can also specify if the plotting is necessary for location ("location") or protein class ("class").

Usage

miRNA_summary_predicted(data, type = "class")

Arguments

data	Requires a data frame generated by score_genes. Class - data frame
type	Requires to specify a value for plotting. If plotting is performed for location select "location", alternatively select "class"; default is "class". Class - string

Value

a data frame with GC content; multiple plots summarising the data are also provided

Examples

## Not run: 
path_to_test_data<- system.file("extdata", "test_data.tabular", package="OmicInt")
# basic usage of miRNA_summary_predicted
df<-utils::read.table(path_to_test_data)
return_df<-miRNA_summary_predicted(df)
head(return_df)

## End(Not run)

OmicInt documentation built on Oct. 28, 2021, 5:09 p.m.