location_map: location_map

In OmicInt: Omics Network Exploration

Description

Function provides visualisation of how the highest and lowest LFCscore genes cluster based on protein cellular location data. Function requires a data frame generated by the score_genes function.

Usage

location_map(data, num = 0)

Arguments

data	Requires a data frame generated by score_genes; class - data frame
num	a number for genes to cluster from top upregulated and downregulated genes, if not selected all genes will be used; default 0, i.e. do not select a smaller set; class - integer

Value

dendogram, class - plot

Examples

## Not run: 
path_to_test_data<- system.file("extdata", "test_data.tabular", package="OmicInt")
# basic usage of location_map
df<-utils::read.table(path_to_test_data)
location_map(df)
## End(Not run)

OmicInt documentation built on Oct. 28, 2021, 5:09 p.m.