OneArmPhaseTwoStudy: Planing, Monitoring and Evaluating Oncological Phase 2 Studies

Purpose of this package is it to plan, monitor and evaluate oncological phase II studies. In general this kind of studies are single-arm trials with planned interim analysis and binary endpoint. To meet the resulting requirements, the package provides functions to calculate and evaluate 'Simon's two-stage designs' and 'so-called' 'subset designs'. If you are unfamiliar with this package a good starting point is to take a closer look at the functions getSolutions() and getSolutionsSub1().The web-based tool (https://imbi.shinyapps.io/phaseII-app/) extends the functionality of our R package by means of a proper dealing with over- and underrunning. The R function binom.test of the 'stats' R package and the package 'binom' might be helpful to assess the performance of the corresponding one-stage design as a reference.

Install the latest version of this package by entering the following in R:
install.packages("OneArmPhaseTwoStudy")
AuthorMarius Wirths
Date of publication2016-05-23 11:28:04
MaintainerMarius Wirths <wirths@imbi.uni-heidelberg.de>
LicenseGPL (>= 2)
Version0.1.6

View on CRAN

Man pages

getCE: Calculates the conditional error.

get_CI: Calculates the confidence interval.

get_conditionalPower: Calculates the conditional power.

get_confidence_set: Calculates the confidence set.

getCP: Calculates the conditional power.

getCP_simon: Returns the conditional power.

getD_distributeToOne: Get the conditional errors.

getD_equally: Get the conditional errors equally.

getD_none: Get the conditional errors.

getD_proportionally: Get the conditional errors proportionally.

getN2: Calculates the number of patients which should be enrolled in...

getP: Calculates the p-value (binomial test).

get_p_exact_subset: Calculates the exact p value.

get_p_KC: Calculates the p-value.

get_r2_flex: Calculates the number of responses needed for the second...

getSolutions: Returns designs for a given "simon"-object (see 'setupSimon')

getSolutionsSub1: Calculates designs for a given "sub1"-object.

get_UMVUE_GMS: Calculates the "uniformly minimal variance unbiased...

get_UMVUE_GMS_subset_second_only: Calculates the "uniformly minimal variance unbiased...

get_UMVUE_GMS_subset_second_total: Calculates the "uniformly minimal variance unbiased...

plot_confidence_set: Plots the "confidence set" according to the observed...

plot_simon_study_state: Plots the study state of a given Simon's two-stage design.

plot_sub1_study_state: Plots the study state of a given subset design.

setSimonParams: Sets the parameters for a given "simon"-object.

setSub1Params: Sets the parameters for a given "sub1"-object.

setupSimon: Creates a "simon"-object.

setupSub1Design: Creates a "sub1"-object.

simon_module: Functions and Objects created by Rcpp for the "Simon's...

sub1_module: Functions and Objects created by Rcpp for the "subset design"

toDataframe: Helper function for 'getSolutions' and 'getSolutionsSub1'.

Functions

getCE Man page
get_CI Man page
get_conditionalPower Man page
get_confidence_set Man page
getCP Man page
getCP_simon Man page
getD_distributeToOne Man page
getD_equally Man page
getD_none Man page
getD_proportionally Man page
getN2 Man page
getP Man page
get_p_exact_subset Man page
get_p_KC Man page
get_r2_flex Man page
getSolutions Man page
getSolutionsSub1 Man page
get_UMVUE_GMS Man page
get_UMVUE_GMS_subset_second_only Man page
get_UMVUE_GMS_subset_second_total Man page
plot_confidence_set Man page
plot_simon_study_state Man page
plot_sub1_study_state Man page
Rcpp_SimonDesign-class Man page
Rcpp_Sub1Design-class Man page
setSimonParams Man page
setSub1Params Man page
setupSimon Man page
setupSub1Design Man page
SimonDesign Man page
Sub1Design Man page
toDataframe Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.