NEWS.md

In OpenSpecy: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra

OpenSpecy 1.0.6

Minor Improvements

• Add attributes to OpenSpecy objects
• More flexible sig_noise()
• Simpler matching

OpenSpecy 1.0.5

Minor Improvements

• Support .tsv files

Bug Fixes

• Flip xy coordinates in ENVI files

OpenSpecy 1.0.4

Minor Improvements

• More contributors
• showlegend argument for interactive plots

Bug Fixes

• Fixes a fatal error in match_spec() probably causing incorrect identifications

OpenSpecy 1.0.3

Minor Improvements

• Simplify check_OpenSpecy()
• Improve unit tests
• Improve interactive plots

OpenSpecy 1.0.2

Bug Fixes

• Set data.table threads to 2 for (CRAN) checks

OpenSpecy 1.0.1

Bug Fixes

• Fixed spelling mistakes
• Reduced example and test run times for CRAN

OpenSpecy 1.0.0

New Features

• Complete package, app, and SOP overhaul!
• The Shiny app has been outsourced to an own GitHub repository: https://github.com/wincowgerDEV/OpenSpecy-shiny
• Spectra are now stored in dedicated OpenSpecy objects, which can be managed with a set of new functions including c_spec() for concatenating spectra or converting them back to tables
• Various functions have been renamed and improved, for instance, to facilitate reading (and writing) spectral files
• New functions include def_features() to identify microplastics in spectral maps and ai_classify() to use AI for matching/identifying spectra

Minor Improvements

• Added pkgdown documentation
• Added code coverage tests

OpenSpecy 0.9.5

Bug Fixes

• Fixed outdated links and redirects

OpenSpecy 0.9.4

Minor Improvements

• UI improvements
• Gitter support

Bug Fixes

• Fixed invalid regex failing CRAN checks

OpenSpecy 0.9.3

Minor Improvements

• Better error handling for .csv formats
• Add funders and goals
• Updated package citation
• CI testing for Mac

Bug Fixes

• Fixed testthat routines occasionally failing CRAN checks

OpenSpecy 0.9.2

New Features

• Manual baseline corrections
• Citable technical note

Minor Improvements

• More generic .spa file reading
• Added funding

Bug Fixes

• UI improvements

OpenSpecy 0.9.1

Bug Fixes

• Checks fail gracefully if api.osf.io is not reachable
• Adjust UI selectors to comply with inverse axis and not exceed ranges

OpenSpecy 0.9.0

New Features

• UI overhaul
• Give more control to the user when starting via run_app()

Minor Improvements

• Reverse spectral axes to comply with most wavenumber scales
• Let users select metadata license
• Improved data sharing and logging capabilities
• Google Analytics removed

Bug Fixes

• Use tempdir for unit tests and examples

OpenSpecy 0.8.2

Minor Improvements

• Compliance with CRAN style guide
• More references with DOIs
• Better error/warning messages during Shiny file input

Bug Fixes

• Fixed bug with Shiny reactive values

OpenSpecy 0.8.1

Bug Fixes

• Fix redirecting URLs

OpenSpecy 0.8.0

New Features

• Use external Open Specy libraries from OSF
• read_asp() for reading Agilent .asp files
• GUI overhaul
• Comprehensive package vignette and function documentation
• Unit testing for main functions

Minor Improvements

• Better error handling
• Stripped down dependencies

OpenSpecy 0.7.0

• Transferred code base from openspecy.org to this R package

OpenSpecy documentation built on Nov. 26, 2023, 1:09 a.m.