MethylDiff: Get the mean methylation difference across a specified...
In PCBS: Principal Component BiSulfite
MethylDiff R Documentation
Get the mean methylation difference across a specified region.
Description
Using a chromDictMeth() output object, quickly calculate the mean methylation difference across a user-specified region.
Usage
MethylDiff(chromDictMeth, chrom, start, end)
Arguments
chromDictMeth
chromDictMeth() output object
chrom
character, chromosome
start
integer, region start
end
integer, region end
Value
Returns a list of data.tables for each chromosome, for faster analysis.
Examples
chromDictMethylDiff <- chromDictMeth(eigen, c("trt", "ctl"))
MethylDiff(chromDictMethylDiff, "chr3", 4920450, 4923267)
PCBS documentation built on Sept. 11, 2024, 6:11 p.m.
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| MethylDiff | R Documentation |
Get the mean methylation difference across a specified region.
Description
Using a chromDictMeth() output object, quickly calculate the mean methylation difference across a user-specified region.
Usage
MethylDiff(chromDictMeth, chrom, start, end)
Arguments
chromDictMeth |
chromDictMeth() output object |
chrom |
|
start |
|
end |
|
Value
Returns a list of data.tables for each chromosome, for faster analysis.
Examples
chromDictMethylDiff <- chromDictMeth(eigen, c("trt", "ctl"))
MethylDiff(chromDictMethylDiff, "chr3", 4920450, 4923267)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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