oneSeed: Nested DMR calling function within within get_all_DMRs(),...

In PCBS: Principal Component BiSulfite

Nested DMR calling function within within get_all_DMRs(), Get_Novel_DMRs()

Description

Expands one DMR from a single point.

Usage

oneSeed(chroms, seed, resolution, max.size, mincpgs, null_list, Zlim=1)

Arguments

chroms	chromDict() output.
seed	seed value input
resolution	Get_Novel_DMRs arg DMR_resolution
max.size	Get_Novel_DMRs arg QueryLimit
mincpgs	Get_Novel_DMRs arg minCpGs
null_list	get_all_DMRs arg null
Zlim	Get_Novel_DMRs arg minZ

Value

returns a list of two indices, containing a data.frame with the output from a single compressed seed expansion and a data.frame of locus information around the seed expansion, intended for use within the Get_Novel_DMRs() function.

PCBS documentation built on Sept. 11, 2024, 6:11 p.m.