eigen: Simulated WGBS data for PCBS vignettes

In PCBS: Principal Component BiSulfite

Simulated WGBS data for PCBS vignettes

Description

simulated WGBS data with added DMRs and DMLs

Usage

eigen

Format

A data frame with 50000 observations on the following 13 variables.

cpgID

a character vector, chrom:locus

trt1_PercMeth

a numeric vector, percent methylated of sample trt1

trt1_nCpG

a numeric vector, depth of sample trt1

trt2_PercMeth

a numeric vector, percent methylated of sample trt2

trt2_nCpG

a numeric vector, depth of sample trt2

trt3_PercMeth

a numeric vector, percent methylated of sample trt3

trt3_nCpG

a numeric vector, depth of sample trt3

ctl1_PercMeth

a numeric vector, percent methylated of sample ctl1

ctl1_nCpG

a numeric vector, depth of sample ctl1

ctl2_PercMeth

a numeric vector, percent methylated of sample ctl2

ctl2_nCpG

a numeric vector, depth of sample ctl2

ctl3_PercMeth

a numeric vector, percent methylated of sample ctl3

ctl3_nCpG

a numeric vector, depth of sample ctl3

Source

generated through simulation

PCBS documentation built on Sept. 11, 2024, 6:11 p.m.