trimDMR: Nested DMR calling function within within Get_Novel_DMRs()

In PCBS: Principal Component BiSulfite

Nested DMR calling function within within Get_Novel_DMRs()

Description

Trims the edges off of DMR expansions.

Usage

trimDMR(df, region, min.dmr.cpgs, max.dmr.size, null_summary, null_values)

Arguments

df	DMR expansion output dataframe.
region	get_all_DMRs() region output
min.dmr.cpgs	Get_Novel_DMRs arg minCpGs
max.dmr.size	Get_Novel_DMRs arg QueryLimit
null_summary	null distribution conrtainer
null_values	null distribution conrtainer

Value

Returns a data.frame of all trimmed DMRs for use within the Get_Novel_DMRs() function.

PCBS documentation built on Sept. 11, 2024, 6:11 p.m.