compile_sim_cpp: Compile ODE model to c++ function

In PKPDsim: Tools for Performing Pharmacokinetic-Pharmacodynamic Simulations

Compile ODE model to c++ function

Description

Compile ODE model to c++ function

Usage

compile_sim_cpp(
  code,
  dose_code,
  pk_code,
  size,
  p,
  cpp_show_code,
  code_init = NULL,
  state_init = NULL,
  declare_variables = NULL,
  variables = NULL,
  covariates = NULL,
  obs = NULL,
  dose = NULL,
  iov = NULL,
  compile = TRUE,
  verbose = FALSE,
  as_is = FALSE
)

Arguments

code	C++ code ODE system
dose_code	C++ code per dose event
pk_code	C++ code per any event (similar to $PK)
size	size of ODE system
p	parameters (list)
cpp_show_code	show output c++ function?
code_init	code for initialization of state
state_init	state init vector
declare_variables	variable declaration for all required variables (including user-specified)
variables	only the user-specified variables
covariates	covariates specification
obs	observation specification
dose	dose specification
iov	iov specification
compile	compile or not?
verbose	show more output
as_is	use C-code as-is, don't substitute line-endings or shift indices

Value

List containing ODE definition in C++ code and simulation function

PKPDsim documentation built on March 7, 2023, 5:40 p.m.