API for POUMM
The Phylogenetic Ornstein-Uhlenbeck Mixed Model
| Global functions | |
|---|---|
| H2 | Man page Source code |
| H2e | Man page Source code |
| OU | Man page |
| POUMM | Man page Source code |
| POUMMIsADevRelease | Man page Source code |
| PhylogeneticH2 | Man page |
| alpha | Man page Source code |
| analyseMCMCs | Man page Source code |
| chld | Man page Source code |
| coef.POUMM | Man page Source code |
| convertToMCMC | Source code |
| covFunPOUMM | Man page Source code |
| covHPDFunPOUMM | Man page Source code |
| covPOUMM | Man page Source code |
| covVTipsGivenTreePOUMM | Man page |
| dOU | Man page Source code |
| dVNodesGivenTreePOUMM | Man page Source code |
| dVTipsGivenTreePOUMM | Man page Source code |
| edgesFrom | Man page Source code |
| fitted.POUMM | Man page Source code |
| gPOUMM | Man page |
| generateStatisticFunG0 | Source code |
| likPOUMMGivenTreeVTips | Man page |
| likPOUMMGivenTreeVTipsC | Man page Source code |
| logLik.POUMM | Man page Source code |
| loglik_abc_g0_g0Prior | Man page Source code |
| maxLikPOUMMGivenTreeVTips | Man page Source code |
| mcmc.poumm | Man page |
| mcmcPOUMMGivenPriorTreeVTips | Man page |
| meanOU | Man page Source code |
| memoiseMax | Source code |
| nobs.POUMM | Man page Source code |
| nodeTimes | Man page Source code |
| plot.POUMM | Man page Source code |
| plot.summary.POUMM | Man page Source code |
| plotPOUMMLikelihoodMainLoop | Source code |
| printPOUMMLikelihoodMainLoop | Source code |
| pruneTree | Man page Source code |
| rOU | Man page Source code |
| rTrajectoryOU | Man page Source code |
| rTrajectoryOUDef | Man page Source code |
| rVNodesGivenTreePOUMM | Man page Source code |
| residuals.POUMM | Man page Source code |
| sdOU | Man page Source code |
| sigmaOU | Man page Source code |
| sigmae | Man page Source code |
| simulatePOUMMLikelihoodMainLoop | Man page Source code |
| simulateTrait | Man page Source code |
| specPOUMM | Man page |
| specifyPMM | Man page Source code |
| specifyPMM_H2tMeanSe | Man page Source code |
| specifyPMM_H2tMeanSeG0 | Man page Source code |
| specifyPMM_SSeG0 | Man page Source code |
| specifyPOUMM | Man page Source code |
| specifyPOUMM_ATH2tMeanSe | Man page Source code |
| specifyPOUMM_ATH2tMeanSeG0 | Man page Source code |
| specifyPOUMM_ATS | Man page Source code |
| specifyPOUMM_ATSG0 | Man page Source code |
| specifyPOUMM_ATSSeG0 | Man page Source code |
| statistics | Man page |
| statistics.POUMM | Man page |
| summary.POUMM | Man page Source code |
| validateSpecPOUMM | Man page Source code |
| validateZTree | Man page Source code |
| varOU | Man page Source code |
| vignetteCachedResults | Man page |
