fitted.POUMM: Extract maximum likelihood expected genotypic values at the...
In POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model
fitted.POUMM R Documentation
Extract maximum likelihood expected genotypic values at the tips of a tree,
to which a POUMM model has been previously fitted
Description
Extract maximum likelihood expected genotypic values at the tips of a tree,
to which a POUMM model has been previously fitted
Usage
## S3 method for class 'POUMM'
fitted(object, vCov = FALSE, ...)
Arguments
object
An object of class POUMM.
vCov
A logical indicating whether a list with the genotypic values and their variance covariance matrix should be returned or only a vector of the genotypic values (default is FALSE).
...
Not used; added for compatibility with generic function fitted.
Value
If vCov == TRUE, a list with elements g - the genotypic values and
vCov - the variance-covariance matrix of these values for the specific tree,
observed values z and POUMM ML-fit. If vCov == FALSE, only the vector of
genotypic values corresponding to the tip-labels in the tree is returned.
POUMM documentation built on June 8, 2025, 10:58 a.m.
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| fitted.POUMM | R Documentation |
Extract maximum likelihood expected genotypic values at the tips of a tree, to which a POUMM model has been previously fitted
Description
Extract maximum likelihood expected genotypic values at the tips of a tree, to which a POUMM model has been previously fitted
Usage
## S3 method for class 'POUMM'
fitted(object, vCov = FALSE, ...)
Arguments
object |
An object of class POUMM. |
vCov |
A logical indicating whether a list with the genotypic values and their variance covariance matrix should be returned or only a vector of the genotypic values (default is FALSE). |
... |
Not used; added for compatibility with generic function fitted. |
Value
If vCov == TRUE, a list with elements g - the genotypic values and vCov - the variance-covariance matrix of these values for the specific tree, observed values z and POUMM ML-fit. If vCov == FALSE, only the vector of genotypic values corresponding to the tip-labels in the tree is returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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