loglik_abc_g0_g0Prior: Processing of the root value and calculation of the maximum...

In POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model

Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.

Description

Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.

Usage

loglik_abc_g0_g0Prior(abc, alpha, theta, sigma, g0, g0Prior)

Arguments

abc	a vector of 3 numerical values denoting the corresponding coefficients in the POUMM likelihood presented as exp(a g0^2 + b g0 + c).
alpha, theta, sigma	parameters of the OU-process.
g0	initial value at the root of the tree (can be NA). See argument parMapping in ?specifyPOUMM.
g0Prior	list object. See parameter g0Prior in ?specifyPOUMM.

POUMM documentation built on June 8, 2025, 10:58 a.m.