simulateTrait: Simulate a trait on a tree under a ML fit of the POUMM model
In POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Description
Usage
Arguments
Details
Value
See Also
Description
Use the maximum likelihood parameters of the model to simulate
trait values on a phylogenetic tree.
Usage
1
simulateTrait(object, tree = NULL)
Arguments
object
an S3 object of class POUMM
tree
a phylo object. If NULL (default) the trait is simulated on the
tree, on which the POUMM object has been fit.
Details
This function is a shortcut to calling
rVNodesGivenTreePOUMM, which will map the inferred parameters
of the model back to the original POUMM parameters alpha, theta, sigma, sigmae,
and g0.
Value
a numerical vector containing the simulated trait value for each tip
in the tree.
See Also
POUMM documentation built on Oct. 27, 2020, 5:06 p.m.
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Description Usage Arguments Details Value See Also
Description
Use the maximum likelihood parameters of the model to simulate trait values on a phylogenetic tree.
Usage
1 | simulateTrait(object, tree = NULL)
|
Arguments
object |
an S3 object of class POUMM |
tree |
a phylo object. If NULL (default) the trait is simulated on the tree, on which the POUMM object has been fit. |
Details
This function is a shortcut to calling
rVNodesGivenTreePOUMM, which will map the inferred parameters
of the model back to the original POUMM parameters alpha, theta, sigma, sigmae,
and g0.
Value
a numerical vector containing the simulated trait value for each tip in the tree.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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