API for PRECAST
Embedding and Clustering with Alignment for Spatial Datasets
| Global functions | |
|---|---|
| .findSVGs | Source code |
| .logDiffTime | Source code |
| .logTime | Source code |
| .onAttach | Source code |
| AddAdjList | Man page Source code |
| AddParSetting | Man page Source code |
| AddTSNE | Man page Source code |
| AddUMAP | Man page Source code |
| Add_embed | Man page Source code |
| CreatePRECASTObject | Man page Source code |
| Human_HK_genes | Man page |
| ICM.EM | Man page Source code |
| ICM.EM_structure | Man page Source code |
| IntegrateSpaData | Man page Source code |
| Mouse_HK_genes | Man page |
| PRECAST | Man page Source code |
| PRECASTObj | Man page |
| PRECASTObj-class | Man page |
| SelectModel | Man page Source code |
| SelectModel.PRECASTObj | Man page Source code |
| SelectModel.SeqK_PRECAST_Object | Man page Source code |
| SpaPlot | Man page Source code |
| addnames | Source code |
| barPlot | Source code |
| boxPlot | Man page Source code |
| calculateWeight | Source code |
| chooseColors | Man page Source code |
| coordinate_rotate | Man page Source code |
| degree_freedom | Source code |
| dfList2df | Source code |
| dimPlot | Man page Source code |
| doHeatmap | Man page Source code |
| doHeatmap.matrix | Source code |
| drawFigs | Man page Source code |
| featurePlot | Man page Source code |
| filter_gene | Source code |
| filter_spot | Source code |
| find_neighbors | Source code |
| firstup | Man page Source code |
| gendataInte_sp | Source code |
| gendata_seulist | Source code |
| getAdjList | Source code |
| getAdj_fixedNumber | Man page Source code |
| getAdj_reg | Man page Source code |
| getXList | Source code |
| get_correct_exp | Source code |
| get_correct_mean_exp | Source code |
| get_data_fromSeurat | Source code |
| get_fixedNumber_neighbors | Source code |
| get_indexList | Source code |
| get_sampleID | Source code |
| get_varfeature_fromSeurat | Source code |
| getneighborhood_fast | Source code |
| gg_color_hue | Source code |
| idrsc | Source code |
| idrsc2Cpp | Source code |
| mat2list | Source code |
| matlist2mat | Source code |
| model_set | Man page Source code |
| mycluster | Source code |
| mytheme | Source code |
| parafun_int | Source code |
| plot_RGB | Man page Source code |
| plot_scatter | Man page |
| Source code | |
| print.PRECASTObj | Source code |
| replaceStr | Source code |
| selectIntFeatures | Man page Source code |
| sp_means_Rcpp | Source code |
| sp_sums_Rcpp | Source code |
| vec2list | Source code |
| volinPlot | Man page Source code |
| wpca | Source code |
| wpcaCpp | Source code |
