NEWS.md

In Patterns: Deciphering Biological Networks with Patterned Heterogeneous Measurements

Patterns 1.4

• Fixed escaped characters in Rd files, updated maintainer address and separated Patterns classes from Cascade ones in order to prevent unwanted side effects when both packages are loaded. Various fixes to data files and code to adapt to the new classes.

Patterns 1.3

• Roxygen the package, add badges, logo, package help page and update pkgdown site.

Patterns 1.2

• Fix a lasso based function due to glmnet 3.0 release.

Patterns 1.1

• Fix discrepancy between datalist and datasets as requested by CRAN.

Patterns 1.0

• CRAN release of the package.

Patterns 0.99

• First vignette completion and second vignette creation.
• Github Release of the package.

Patterns 0.9

• Vignette creation.

Patterns 0.8

• Readme and help pages were enhanced.
• Minor fixes for some functions.
• Only the header of the CLL dataset is now shipped with the package. The remaining part can be downloaded from the github repository of the package using the code provided in the manual section.

Patterns 0.7

• Updated evolution and animation functions.
• Updated compare fonction.
• Adapted new example dataset and completed help pages.

Patterns 0.6

• New plot functions.
• Prediction was enabled for cascade networks.
• Gene_Id is kept by selection.
• Solved issues when loading the package.

Patterns 0.5

• Package was reshaped.

Patterns 0.4

• Help pages were completed and examples added for every function. It required new datasets that were added to the package.
• Added a NEWS.md file to track changes to the package.
• Package and especially its code was transformed to cope with CRAN requirements

Patterns 0.3

• Added weighted stability selection option for inference function

Patterns 0.2

• Added weighted lasso and selectboost options for inference function

Patterns 0.1

• Creation of the package

Patterns documentation built on Dec. 1, 2022, 5:09 p.m.