incidence.matrix: Incidence matrix of a tree.
In PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/shifts_manipulations.R
incidence.matrix R Documentation
Incidence matrix of a tree.
Description
incidence.matrix computes the incidence matrix T of a tree : for a
lineage i and a branch b, T[i,b]=1 if b is in the lineage i, and 0
otherwise.
Usage
incidence.matrix(phylo)
Arguments
phylo
a phylogenetic tree, class phylo.
Value
Matrix of incidence, size Nedge x ntaxa.
See Also
incidence.matrix.full
PhylogeneticEM documentation built on Aug. 31, 2022, 9:16 a.m.
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View source: R/shifts_manipulations.R
| incidence.matrix | R Documentation |
Incidence matrix of a tree.
Description
incidence.matrix computes the incidence matrix T of a tree : for a
lineage i and a branch b, T[i,b]=1 if b is in the lineage i, and 0
otherwise.
Usage
incidence.matrix(phylo)
Arguments
phylo |
a phylogenetic tree, class |
Value
Matrix of incidence, size Nedge x ntaxa.
See Also
incidence.matrix.full
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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