View source: R/parsimonyNumber.R
init.parsimonyNumber | R Documentation |
init.parsimonyNumber
initialize a (ntaxa + Nnode)x(nclus) matrix with
NAs everywhere, except for the tips.
init.parsimonyNumber(phy, clusters)
phy |
phylogenetic tree. |
clusters |
the vector of the clusters of the tips. |
At a tip i in state k, the line-vector is initialized as follow : Ind(k=p)_1<=p<=nclus
A (ntaxa + Nnode)x(nclus) matrix, with ntaxa first lines initialized as described.
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