penalty_pBIC: Penalty function type pBIC

In PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Penalty function type pBIC

Description

penalty_pBIC_scalarOU is the pBIC.

Usage

penalty_pBIC(
  all_params,
  model_complexity,
  independent,
  tree,
  times_shared,
  distances_phylo,
  T_tree,
  p,
  K,
  ntaxa,
  process
)

Arguments

model_complexity	the complexity of the set of models with dimension K.
K	the dimension of the model.
ntaxa	the number of tips.
C	a constant, C > 1. Default is C = 1.1 (as suggested in Baraud Giraud Huet (2009))

Value

value of the penalty.

See Also

penalty_BirgeMassart_shape1, penalty_BirgeMassart_shape2

PhylogeneticEM documentation built on Aug. 31, 2022, 9:16 a.m.