readMS: Read output data from MS and MSMS
In PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses
Description
Usage
Arguments
Value
References
Examples
Description
This function reads data produced from the coalescent simulation programs
MS (Hudson, 2002 ) and MSMS (Greg, 2010)
Usage
1
Arguments
file
the basepath of the MS/MSMS output
big.data
The ff package is used
Value
An object of class GENOME
References
Hudson, R. R. (2002). Generating samples under a Wright-Fisher neutral model of genetic variation.
Bioinformatics 18: 337-338
Gregory Ewing and Joachim Hermisson, MSMS: A Coalescent Simulation Program Including Recombination, Demographic Structure, and Selection at a Single Locus. Bioinformatics 2010, doi: 10.1093/bioinformatics/btq322
Examples
1
2
# GENOME.class <- readMS("ms.output.txt")
# GENOME.class@region.names
PopGenome documentation built on Feb. 1, 2020, 1:07 a.m.
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Description Usage Arguments Value References Examples
Description
This function reads data produced from the coalescent simulation programs
MS (Hudson, 2002 ) and MSMS (Greg, 2010)
Usage
1 |
Arguments
file |
the basepath of the MS/MSMS output |
big.data |
The ff package is used |
Value
An object of class GENOME
References
Hudson, R. R. (2002). Generating samples under a Wright-Fisher neutral model of genetic variation.
Bioinformatics 18: 337-338
Gregory Ewing and Joachim Hermisson, MSMS: A Coalescent Simulation Program Including Recombination, Demographic Structure, and Selection at a Single Locus. Bioinformatics 2010, doi: 10.1093/bioinformatics/btq322
Examples
1 2 | # GENOME.class <- readMS("ms.output.txt")
# GENOME.class@region.names
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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