set.outgroup-methods: Define an outgroup
In PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses
Description
Usage
Arguments
Examples
Description
This generic function defines the outgroup by matching the specified vector against
each region.
Usage
1
2
## S4 method for signature 'GENOME'
set.outgroup(object,new.outgroup=FALSE, diploid=FALSE)
Arguments
object
an object of class "GENOME"
new.outgroup
a vector of outgroup individuals
diploid
if diploid data is present
Examples
1
2
3
4
# GENOME.class <- readData("\home\Alignments")
# outgroup <- c("seq1","seq2")
# GENOME.class <- set.outgroup(GENOME.class,new.outgroup=outgroup)
# GENOME.class <- neutrality.stats(GENOME.class)
PopGenome documentation built on Feb. 1, 2020, 1:07 a.m.
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Description Usage Arguments Examples
Description
This generic function defines the outgroup by matching the specified vector against
each region.
Usage
1 2 | ## S4 method for signature 'GENOME'
set.outgroup(object,new.outgroup=FALSE, diploid=FALSE)
|
Arguments
object |
an object of class |
new.outgroup |
a vector of outgroup individuals |
diploid |
if diploid data is present |
Examples
1 2 3 4 | # GENOME.class <- readData("\home\Alignments")
# outgroup <- c("seq1","seq2")
# GENOME.class <- set.outgroup(GENOME.class,new.outgroup=outgroup)
# GENOME.class <- neutrality.stats(GENOME.class)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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