RunHarmonyLouvain: Embedding alignment and clustering based on the embeddings...
In ProFAST: Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction
RunHarmonyLouvain R Documentation
Embedding alignment and clustering based on the embeddings from FAST
Description
Embedding alignment and clustering using the Harmony and Louvain based on the ebmeddings from FAST as well as determining the number of clusters.
Usage
RunHarmonyLouvain(PRECASTObj, resolution = 0.5)
Arguments
PRECASTObj
a PRECASTObj object created by CreatePRECASTObject.
resolution
an optional real, the value of the resolution parameter, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities.
Value
Return a revised PRECASTObj object with slot PRECASTObj@resList added by a Harmony compoonent (including the aligned embeddings and embeddings of batch effects) and a Louvain component (including the clusters).
ProFAST documentation built on May 29, 2024, 7:15 a.m.
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| RunHarmonyLouvain | R Documentation |
Embedding alignment and clustering based on the embeddings from FAST
Description
Embedding alignment and clustering using the Harmony and Louvain based on the ebmeddings from FAST as well as determining the number of clusters.
Usage
RunHarmonyLouvain(PRECASTObj, resolution = 0.5)
Arguments
PRECASTObj |
a PRECASTObj object created by |
resolution |
an optional real, the value of the resolution parameter, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities. |
Value
Return a revised PRECASTObj object with slot PRECASTObj@resList added by a Harmony compoonent (including the aligned embeddings and embeddings of batch effects) and a Louvain component (including the clusters).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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