Files in ProFAST

Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction

MD5

README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/main.R R/iSCMEB.R R/global.R R/CoFAST.R

src/Makevars.win

src/Makevars

src/profast.cpp

src/cofast_util.cpp

src/RcppExports.cpp

src/getNB_fast.cpp

src/DR_removebatch.cpp

src/alignExps.cpp

src/alignExp.cpp

src/DR_removebatch.h

inst/doc/FASTdlpfc2.Rmd

inst/doc/pbmc3k.html

inst/doc/CosMx.Rmd inst/doc/FASTsimu.Rmd

inst/doc/CosMx.html

inst/doc/FASTdlpfc.html

inst/doc/CosMx.R inst/doc/FASTdlpfc.Rmd inst/doc/FASTdlpfc.R inst/doc/FASTdlpfc2.R

inst/doc/FASTsimu.html

inst/doc/pbmc3k.R

inst/doc/FASTdlpfc2.html

inst/doc/pbmc3k.Rmd inst/doc/FASTsimu.R

build/vignette.rds

vignettes/FASTdlpfc2.Rmd vignettes/CosMx.Rmd vignettes/FASTsimu.Rmd vignettes/FASTdlpfc.Rmd vignettes/pbmc3k.Rmd

data/pbmc3k_subset.rda

data/CosMx_subset.rda

data/top5_signatures.rda

man/FAST_single.Rd man/AddAdj.Rd man/NCFM_fast.Rd man/coembed_plot.Rd man/iscmeb_run.Rd man/top5_signatures.Rd man/SelectHKgenes.Rd man/FAST_run.Rd man/model_set_FAST.Rd man/RuniSCMEB.Rd man/diagnostic.cor.eigs.Rd man/transferGeneNames.Rd man/pdistance.Rd man/FAST_structure.Rd man/coembedding_umap.Rd man/CosMx_subset.Rd man/AddParSettingFAST.Rd man/pbmc3k_subset.Rd man/IntegrateSRTData.Rd man/NCFM.Rd man/find.signature.genes.Rd man/RunHarmonyLouvain.Rd man/get.top.signature.dat.Rd man/FAST.Rd man/get_r2_mcfadden.Rd

ProFAST documentation built on June 4, 2026, 5:07 p.m.