API for ProFAST
Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction
| Global functions | |
|---|---|
| .logDiffTime | Source code |
| .logTime | Source code |
| AddAdj | Man page Source code |
| AddParSettingFAST | Man page Source code |
| Add_embed | Source code |
| CosMx_subset | Man page |
| Diag | Source code |
| FAST | Man page Source code |
| FAST_run | Man page Source code |
| FAST_single | Man page |
| FAST_single_coembed | Source code |
| FAST_structure | Man page Source code |
| Factor_nc | Source code |
| IntegrateSRTData | Man page Source code |
| NCFM | Man page Source code |
| NCFM_fast | Man page Source code |
| RunHarmonyLouvain | Man page Source code |
| RuniSCMEB | Man page Source code |
| SelectHKgenes | Man page Source code |
| approxPCA | Source code |
| coembed_plot | Man page |
| coembedding_umap | Man page Source code |
| compute.AdjList | Source code |
| correct_genes | Source code |
| correct_genesR | Source code |
| correct_genes_subsampleR | Source code |
| correct_one_gene | Source code |
| diagnostic.cor.eigs | Man page Source code |
| diagnostic.cor.eigs.Seurat | Man page Source code |
| diagnostic.cor.eigs.default | Man page Source code |
| drLouvain | Source code |
| find.signature.genes | Man page Source code |
| find_neighbors | Source code |
| fit.iscmeb | Source code |
| gene.activity.score.seu | Source code |
| gene_embed_cpp | Source code |
| get.indexList | Source code |
| get.top.signature.dat | Man page Source code |
| getAdj_fixedNumber | Source code |
| getAdj_reg | Source code |
| get_fixedNumber_neighbors | Source code |
| get_indexList | Source code |
| get_initial_value4seqK | Source code |
| get_r2_mcfadden | Man page Source code |
| get_sampleID | Source code |
| get_varfeature_fromSeurat | Source code |
| getneighborhood_fast | Source code |
| iSCMEBCpp | Source code |
| iscmeb_run | Man page Source code |
| mat2list | Source code |
| model_set_FAST | Man page Source code |
| mycluster | Source code |
| parafun_int | Source code |
| pbmc3k_subset | Man page |
| pdistance | Man page Source code |
| pdistance_cpp | Source code |
| profast_g_cpp | Source code |
| profast_p_cpp | Source code |
| selectHKFeatures | Source code |
| top5_signatures | Man page |
| transferGeneNames | Man page Source code |
| vec2list | Source code |
| wpcaCpp | Source code |
| write_fig | Source code |
