SelectHKgenes: Select housekeeping genes

In ProFAST: Probabilistic Factor Analysis for Spatially-Aware Dimension Reduction

Select housekeeping genes

Description

Select housekeeping genes for preparation of removing unwanted variations in expression matrices

Usage

SelectHKgenes(seuList, species = c("Human", "Mouse"), HK.number = 200)

Arguments

seuList	an M-length list consisting of Seurat object, include the information of expression matrix and spatial coordinates (named row and col) in the slot meta.data.
species	a string, the species, one of 'Human' and 'Mouse'.
HK.number	an optional integer, specify the number of housekeeping genes to be selected.

Value

Return a string vector of the selected gene names.

ProFAST documentation built on May 29, 2024, 7:15 a.m.