WangF: To perform QTL mapping with wang method

In QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping

To perform QTL mapping with wang method

Description

To perform QTL mapping with wang method

Usage

WangF(
  pheRaw = NULL,
  genRaw = NULL,
  mapRaw1 = NULL,
  yygg1 = NULL,
  flagRIL = NULL,
  cov_en = NULL,
  Population = NULL,
  WalkSpeed = NULL,
  CriLOD = NULL
)

Arguments

pheRaw	phenotype matrix.
genRaw	genotype matrix.
mapRaw1	linkage map matrix.
yygg1	the transformed covariate matrix.
flagRIL	if RIL or not.
cov_en	raw covariate matrix.
Population	population flag.
WalkSpeed	Walk speed for Genome-wide Scanning.
CriLOD	Critical LOD scores for significant QTL.

Value

a list

Examples

data(DHdata)
readraw<-Readdata(file=DHdata,fileFormat="GCIM",
method="GCIM",filecov=NULL,MCIMmap=NULL,MultiEnv=FALSE)
DoResult<-Dodata(fileFormat="GCIM",Population="DH",
method="GCIM",Model="Random",readraw,MultiEnv=FALSE)
ws<-WangF(pheRaw=DoResult$pheRaw,genRaw=DoResult$genRaw,
mapRaw1=DoResult$mapRaw1,yygg1=DoResult$yygg1,
flagRIL=DoResult$flagRIL,cov_en=DoResult$cov_en,
Population="DH",WalkSpeed=1,CriLOD=2.5)

QTL.gCIMapping documentation built on March 18, 2022, 5:54 p.m.