markerinsert: To insert marker in genotype.

In QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping

To insert marker in genotype.

Description

a method that can insert marker in genotype.

Usage

markerinsert(mp,geno,map,cl,gg1,gg2,gg0,flagRIL)

Arguments

mp	linkage map matrix after insert.
geno	genotype matrix.
map	linkage map matrix.
cl	walk speed.
gg1	raw covariate matrix.
gg2	code for type 1.
gg0	code for missing.
flagRIL	RIL population or not.

Author(s)

Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming
Maintainer: Yuanming Zhang<[e-mail]>

Examples

## Not run: 
mp=matrix(c(197.9196,198.7536,199.5876,200.4216,201.2453,
202.0691,202.8928,203.7521,204.6113,205.4706,206.3298,207.1891,
1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,2,2,2,3,3,3,3,3,3,
1,1,1,2,2,2,3,3,3,3,3,3,1,2,3,4,5,6,7,8,9,10,11,12),12,5)
map=matrix(c(1,1,1,1,197.9196,200.4216,202.8928,207.1891),4,2)
geno=matrix(c(1,99,99,99),1,4)
QTL.gCIMapping::markerinsert(mp,geno,map,cl=1,gg1=1,gg2=-1,
gg0=99,flagRIL=1)

## End(Not run)

QTL.gCIMapping documentation built on March 18, 2022, 5:54 p.m.