WenF: To perform QTL mapping with Wen method

In QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping

To perform QTL mapping with Wen method

Description

To perform QTL mapping with Wen method

Usage

WenF(
  pheRaw = NULL,
  genRaw = NULL,
  mapRaw1 = NULL,
  yygg1 = NULL,
  cov_en = NULL,
  WalkSpeed = NULL,
  CriLOD = NULL,
  dir = NULL
)

Arguments

pheRaw	phenotype matrix.
genRaw	genotype matrix.
mapRaw1	linkage map matrix.
yygg1	the transformed covariate matrix.
cov_en	raw covariate matrix.
WalkSpeed	Walk speed for Genome-wide Scanning.
CriLOD	Critical LOD scores for significant QTL.
dir	file path in your computer.

Value

a list

Examples

data(F2data)
readraw<-Readdata(file=F2data,fileFormat="GCIM",
method="GCIM",filecov=NULL,MCIMmap=NULL,
MultiEnv=FALSE)
DoResult<-Dodata(fileFormat="GCIM",Population="F2",
method="GCIM",Model="Random",readraw,MultiEnv=FALSE)
wf<-WenF(pheRaw=DoResult$pheRaw,
genRaw=DoResult$genRaw,mapRaw1=DoResult$mapRaw1,
yygg1=DoResult$yygg1,cov_en=DoResult$cov_en,
WalkSpeed=1,CriLOD=2.5,dir=tempdir())

QTL.gCIMapping documentation built on March 18, 2022, 5:54 p.m.