ZhouF: To perform QTL mapping with Wen method

In QTL.gCIMapping: QTL Genome-Wide Composite Interval Mapping

To perform QTL mapping with Wen method

Description

To perform QTL mapping with Wen method

Usage

ZhouF(
  pheRaw = NULL,
  genRaw = NULL,
  mapRaw1 = NULL,
  WalkSpeed = NULL,
  CriLOD = NULL,
  dir = NULL
)

Arguments

pheRaw	phenotype matrix.
genRaw	genotype matrix.
mapRaw1	linkage map matrix.
WalkSpeed	Walk speed for Genome-wide Scanning.
CriLOD	Critical LOD scores for significant QTL.
dir	file path in your computer.

Value

a list

Examples

data(F2data)
readraw<-Readdata(file=F2data,fileFormat="GCIM",
method="GCIM-QEI",filecov=NULL,
MCIMmap=NULL,MultiEnv=TRUE)
DoResult<-Dodata(fileFormat="GCIM",
Population="F2",method="GCIM-QEI",
Model="Random",readraw,MultiEnv=TRUE)
ZhouMatrices<-ZhouF(pheRaw=DoResult$pheRaw,
genRaw=DoResult$genRaw,
mapRaw1=DoResult$mapRaw1,
WalkSpeed=1,CriLOD=3,
dir=tempdir())

QTL.gCIMapping documentation built on March 18, 2022, 5:54 p.m.