getAssemblyFromFasta: Create an assembly from a FASTA file for its use as parameter...
In RJSplot: Interactive Graphs with R
Description
Usage
Arguments
Value
Note
Author(s)
See Also
Examples
Description
getAssemblyFromFasta create assemblies from a FASTA file for their use as parameter of genomemap_rjs or manhattan_rjs.
Usage
1
getAssemblyFromFasta(fasta)
Arguments
fasta
a "character" string representing the input Fasta file to be added in the genome browser.
Value
a data frame in BED format ready to use as an assembly in genomemap_rjs or manhattan_rjs.
Note
FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes.
Author(s)
David Barrios and Carlos Prieto. Bioinformatics Service of Nucleus, University of Salamanca. See https://bioinfo.usal.es/
See Also
The ‘RJSplot’ Website: https://rjsplot.usal.es
Examples
1
## Live examples and full tutorial on https://rjsplot.usal.es
RJSplot documentation built on Dec. 11, 2021, 9:36 a.m.
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Description Usage Arguments Value Note Author(s) See Also Examples
Description
getAssemblyFromFasta create assemblies from a FASTA file for their use as parameter of genomemap_rjs or manhattan_rjs.
Usage
1 | getAssemblyFromFasta(fasta)
|
Arguments
fasta |
a "character" string representing the input Fasta file to be added in the genome browser. |
Value
a data frame in BED format ready to use as an assembly in genomemap_rjs or manhattan_rjs.
Note
FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes.
Author(s)
David Barrios and Carlos Prieto. Bioinformatics Service of Nucleus, University of Salamanca. See https://bioinfo.usal.es/
See Also
The ‘RJSplot’ Website: https://rjsplot.usal.es
Examples
1 | ## Live examples and full tutorial on https://rjsplot.usal.es
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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