network_rjs: Produce interactive network graph
In RJSplot: Interactive Graphs with R

Description Usage Arguments Value Author(s) See Also Examples

network_rjs creates an interactive network graph.

network_rjs(links, nodes = NULL,
            weight = NULL, linkLabel = NULL, linkColor = NULL,
            group = NULL, size = NULL, color = NULL, label = NULL,
            nodeColorScale = c("RdBk","RdBkGr"), cex = 1, 
            plot = TRUE, jupyter = FALSE, dir = tempdir())

`links`	an edge list table stored in a data frame with at least two columns (source node id and target node id).
`nodes`	a node list stored in a data frame object with rownames as node id.
`weight`	a vector giving the column of `links` to show as weight. If `NULL` but third `links` column is numeric, this one will be used as weight.
`linkLabel`	a vector giving the column of `links` to show as link text.
`linkColor`	a vector giving the column of `links` to compute link color or directly a vector of colors.
`group`	a vector giving the column of `nodes` to show as group.
`size`	a vector giving the column of `nodes` to show as size.
`color`	a vector giving the column of `nodes` to compute node color or directly a vector of colors.
`label`	a vector giving the column of `nodes` to show as label.
`nodeColorScale`	a "character" string representing the color scale applied to nodes by default.
`cex`	number indicating the amount by which plotting text and symbols should be scaled relative to the default.
`plot`	open resulting graph in your browser.
`jupyter`	embed the graph as an iframe into a Jupyter Notebook.
`dir`	a "character" string representing the directory where the graph will be saved.

The function creates a folder in your computer with an HTML document named index.html which contains the graph. This file can be directly opened with your browser.

David Barrios and Carlos Prieto. Bioinformatics Service of Nucleus, University of Salamanca. See https://bioinfo.usal.es/

The ‘RJSplot’ Website: https://rjsplot.usal.es

dendrogram_rjs, densityplot_rjs, genomemap_rjs, heatmap_rjs, manhattan_rjs, network_rjs, scatterplot_rjs, symheatmap_rjs, wordcloud_rjs, boxplot_rjs, bubbles_rjs, hiveplot_rjs, piechart_rjs, barplot_rjs, tables_rjs, surface3d_rjs, scatter3d_rjs.

## Create an interactive network graph in a temporal directory of your local machine
## Live examples on https://rjsplot.usal.es

if(interactive()){
# Prepare data
x <- 1-cor(t(mtcars))

source <- rep(rownames(x),nrow(x))
target <- rep(rownames(x),rep(ncol(x),nrow(x)))
links <- data.frame(source=source,target=target,value=as.vector(x))

# Generate the network graph
network_rjs(links[links[,3]>0.1,], mtcars, group = "cyl", size = "hp", color = "mpg")
}