symheatmap_rjs: Creates a Symetric Heatmap representation.
In RJSplot: Interactive Graphs with R

Description Usage Arguments Value Author(s) See Also Examples

symheatmap_rjs creates an interactive symetric heatmap.

1 2	symheatmap_rjs(links, nodes = NULL, group = NULL, label = NULL, cex = 1, plot = TRUE, jupyter = FALSE, dir = tempdir())

`links`	an edge list table stored in a data frame with three possible columns (source node id, target node id and a link value).
`nodes`	a node list stored in a data frame object with rownames as node id.
`group`	a vector giving the column of `nodes` to show as group.
`label`	a vector giving the column of `nodes` to show as label.
`cex`	number indicating the amount by which plotting text and symbols should be scaled relative to the default.
`plot`	open resulting graph in your browser.
`jupyter`	embed the graph as an iframe into a Jupyter Notebook.
`dir`	a "character" string representing the directory where the graph will be saved.

The function creates a folder in your computer with an HTML document named index.html which contains the graph. This file can be directly opened with your browser.

David Barrios and Carlos Prieto. Bioinformatics Service of Nucleus, University of Salamanca. See https://bioinfo.usal.es/

The ‘RJSplot’ Website: https://rjsplot.usal.es

dendrogram_rjs, densityplot_rjs, genomemap_rjs, heatmap_rjs, manhattan_rjs, network_rjs, scatterplot_rjs, symheatmap_rjs, wordcloud_rjs, boxplot_rjs, bubbles_rjs, hiveplot_rjs, piechart_rjs, barplot_rjs, tables_rjs, surface3d_rjs, scatter3d_rjs.

## Create an interactive symetric heatmap in a temporal directory of your local machine
## Live examples on https://rjsplot.usal.es

if(interactive()){
# prepare data
x <- 1-cor(t(mtcars))

source <- rep(rownames(x),nrow(x))
target <- rep(rownames(x),rep(ncol(x),nrow(x)))
links <- data.frame(source=source,target=target,value=as.vector(x))

# Create symetric heatmap
symheatmap_rjs(links, mtcars, group = "cyl")
}