reformat.ensembl: Reformat Ensembl GeneIDs

In RVA: RNAseq Visualization Automation

Description

This is the function to exclude the version number from the input ensembl type gene ids.

This is the function to exclude the version number from the input ensembl type gene ids.

Usage

reformat.ensembl(logcpm, ct.table.id.type)

reformat.ensembl(logcpm, ct.table.id.type)

Arguments

logcpm	The input count table transformed into log counts per million.
ct.table.id.type	The gene id format in logcpm should be one of: ACCNUM, ALIAS, ENSEMBL, ENSEMBLPROT, ENSEMBLTRANS, ENTREZID, ENZYME, EVIDENCE, EVIDENCEALL, GENENAME, GO, GOALL, IPI, MAP, OMIM, ONTOLOGY, ONTOLOGYALL, PATH, PFAM, PMID, PROSITE, REFSEQ, SYMBOL, UCSCKG, UNIGENE, UNIPROT.

RVA documentation built on Nov. 2, 2021, 1:06 a.m.